Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 13736 | 41431;41432;41433 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
N2AB | 12095 | 36508;36509;36510 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
N2A | 11168 | 33727;33728;33729 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
N2B | 4671 | 14236;14237;14238 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
Novex-1 | 4796 | 14611;14612;14613 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
Novex-2 | 4863 | 14812;14813;14814 | chr2:178636521;178636520;178636519 | chr2:179501248;179501247;179501246 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/S | rs540133480 | -0.398 | 0.079 | N | 0.336 | 0.092 | 0.263140351381 | gnomAD-2.1.1 | 6.79E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 6.39693E-04 | 2.35E-05 | 0 |
A/S | rs540133480 | -0.398 | 0.079 | N | 0.336 | 0.092 | 0.263140351381 | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 1.03598E-03 | 0 | 1.47E-05 | 0 | 0 |
A/S | rs540133480 | -0.398 | 0.079 | N | 0.336 | 0.092 | 0.263140351381 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 2E-03 | None | None | None | 0 | None |
A/S | rs540133480 | -0.398 | 0.079 | N | 0.336 | 0.092 | 0.263140351381 | gnomAD-4.0.0 | 4.77231E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 7.96825E-04 | 0 | 2.03462E-05 | 0 | 3.20205E-05 |
A/T | rs540133480 | -0.434 | 0.885 | N | 0.648 | 0.137 | 0.401327265625 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | N | None | 1.29216E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
A/T | rs540133480 | -0.434 | 0.885 | N | 0.648 | 0.137 | 0.401327265625 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
A/T | rs540133480 | -0.434 | 0.885 | N | 0.648 | 0.137 | 0.401327265625 | gnomAD-4.0.0 | 3.09913E-06 | None | None | None | None | N | None | 1.33511E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 2.54326E-06 | 0 | 1.60159E-05 |
A/V | rs574135671 | -0.144 | 0.939 | N | 0.661 | 0.329 | 0.455996456696 | gnomAD-2.1.1 | 6.08E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 6.39591E-04 | 7.83E-06 | 0 |
A/V | rs574135671 | -0.144 | 0.939 | N | 0.661 | 0.329 | 0.455996456696 | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 1.03695E-03 | 0 | 1.47E-05 | 0 | 0 |
A/V | rs574135671 | -0.144 | 0.939 | N | 0.661 | 0.329 | 0.455996456696 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 2E-03 | None | None | None | 0 | None |
A/V | rs574135671 | -0.144 | 0.939 | N | 0.661 | 0.329 | 0.455996456696 | gnomAD-4.0.0 | 7.1766E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 8.00452E-04 | 0 | 7.18277E-06 | 1.34009E-05 | 2.84414E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.8659 | likely_pathogenic | 0.9024 | pathogenic | -0.76 | Destabilizing | 0.999 | D | 0.701 | prob.neutral | None | None | None | None | N |
A/D | 0.9081 | likely_pathogenic | 0.942 | pathogenic | -0.706 | Destabilizing | 0.986 | D | 0.707 | prob.neutral | None | None | None | None | N |
A/E | 0.8348 | likely_pathogenic | 0.8941 | pathogenic | -0.864 | Destabilizing | 0.939 | D | 0.649 | neutral | N | 0.490049467 | None | None | N |
A/F | 0.7641 | likely_pathogenic | 0.84 | pathogenic | -1.048 | Destabilizing | 0.998 | D | 0.769 | deleterious | None | None | None | None | N |
A/G | 0.3976 | ambiguous | 0.4898 | ambiguous | -0.477 | Destabilizing | 0.76 | D | 0.635 | neutral | N | 0.498510113 | None | None | N |
A/H | 0.8695 | likely_pathogenic | 0.9162 | pathogenic | -0.538 | Destabilizing | 0.999 | D | 0.751 | deleterious | None | None | None | None | N |
A/I | 0.7635 | likely_pathogenic | 0.8251 | pathogenic | -0.451 | Destabilizing | 0.993 | D | 0.705 | prob.neutral | None | None | None | None | N |
A/K | 0.9528 | likely_pathogenic | 0.9709 | pathogenic | -0.746 | Destabilizing | 0.953 | D | 0.651 | neutral | None | None | None | None | N |
A/L | 0.5966 | likely_pathogenic | 0.6867 | pathogenic | -0.451 | Destabilizing | 0.953 | D | 0.657 | neutral | None | None | None | None | N |
A/M | 0.6686 | likely_pathogenic | 0.7396 | pathogenic | -0.374 | Destabilizing | 0.999 | D | 0.693 | prob.neutral | None | None | None | None | N |
A/N | 0.6987 | likely_pathogenic | 0.77 | pathogenic | -0.396 | Destabilizing | 0.986 | D | 0.699 | prob.neutral | None | None | None | None | N |
A/P | 0.8714 | likely_pathogenic | 0.8975 | pathogenic | -0.405 | Destabilizing | 0.991 | D | 0.707 | prob.neutral | N | 0.50170587 | None | None | N |
A/Q | 0.7182 | likely_pathogenic | 0.7996 | pathogenic | -0.717 | Destabilizing | 0.993 | D | 0.713 | prob.delet. | None | None | None | None | N |
A/R | 0.9003 | likely_pathogenic | 0.935 | pathogenic | -0.23 | Destabilizing | 0.986 | D | 0.709 | prob.delet. | None | None | None | None | N |
A/S | 0.1195 | likely_benign | 0.1436 | benign | -0.579 | Destabilizing | 0.079 | N | 0.336 | neutral | N | 0.407118936 | None | None | N |
A/T | 0.247 | likely_benign | 0.2996 | benign | -0.663 | Destabilizing | 0.885 | D | 0.648 | neutral | N | 0.481438678 | None | None | N |
A/V | 0.4941 | ambiguous | 0.5878 | pathogenic | -0.405 | Destabilizing | 0.939 | D | 0.661 | neutral | N | 0.46947419 | None | None | N |
A/W | 0.9631 | likely_pathogenic | 0.9794 | pathogenic | -1.178 | Destabilizing | 0.999 | D | 0.749 | deleterious | None | None | None | None | N |
A/Y | 0.8899 | likely_pathogenic | 0.9247 | pathogenic | -0.836 | Destabilizing | 0.998 | D | 0.765 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.