Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 13968 | 42127;42128;42129 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
N2AB | 12327 | 37204;37205;37206 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
N2A | 11400 | 34423;34424;34425 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
N2B | 4903 | 14932;14933;14934 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
Novex-1 | 5028 | 15307;15308;15309 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
Novex-2 | 5095 | 15508;15509;15510 | chr2:178635287;178635286;178635285 | chr2:179500014;179500013;179500012 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/R | rs879228460 | None | 1.0 | N | 0.798 | 0.384 | 0.590611164678 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
L/R | rs879228460 | None | 1.0 | N | 0.798 | 0.384 | 0.590611164678 | gnomAD-4.0.0 | 6.57393E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.6311 | likely_pathogenic | 0.413 | ambiguous | -0.959 | Destabilizing | 0.993 | D | 0.566 | neutral | None | None | None | None | N |
L/C | 0.8424 | likely_pathogenic | 0.7673 | pathogenic | -0.666 | Destabilizing | 1.0 | D | 0.689 | prob.delet. | None | None | None | None | N |
L/D | 0.9494 | likely_pathogenic | 0.8811 | pathogenic | -0.186 | Destabilizing | 1.0 | D | 0.762 | deleterious | None | None | None | None | N |
L/E | 0.6815 | likely_pathogenic | 0.4912 | ambiguous | -0.244 | Destabilizing | 1.0 | D | 0.715 | prob.delet. | None | None | None | None | N |
L/F | 0.5913 | likely_pathogenic | 0.4028 | ambiguous | -0.697 | Destabilizing | 0.999 | D | 0.69 | prob.delet. | N | 0.509278938 | None | None | N |
L/G | 0.8789 | likely_pathogenic | 0.743 | pathogenic | -1.184 | Destabilizing | 1.0 | D | 0.72 | deleterious | None | None | None | None | N |
L/H | 0.6708 | likely_pathogenic | 0.4779 | ambiguous | -0.325 | Destabilizing | 1.0 | D | 0.767 | deleterious | N | 0.510321716 | None | None | N |
L/I | 0.1648 | likely_benign | 0.114 | benign | -0.465 | Destabilizing | 0.983 | D | 0.473 | neutral | N | 0.432285559 | None | None | N |
L/K | 0.4615 | ambiguous | 0.3101 | benign | -0.535 | Destabilizing | 1.0 | D | 0.765 | deleterious | None | None | None | None | N |
L/M | 0.2723 | likely_benign | 0.1897 | benign | -0.433 | Destabilizing | 0.999 | D | 0.673 | prob.neutral | None | None | None | None | N |
L/N | 0.7822 | likely_pathogenic | 0.5749 | pathogenic | -0.34 | Destabilizing | 1.0 | D | 0.755 | deleterious | None | None | None | None | N |
L/P | 0.9688 | likely_pathogenic | 0.9171 | pathogenic | -0.596 | Destabilizing | 1.0 | D | 0.767 | deleterious | N | 0.5094858 | None | None | N |
L/Q | 0.3817 | ambiguous | 0.2341 | benign | -0.551 | Destabilizing | 1.0 | D | 0.769 | deleterious | None | None | None | None | N |
L/R | 0.454 | ambiguous | 0.3152 | benign | 0.055 | Stabilizing | 1.0 | D | 0.798 | deleterious | N | 0.468529615 | None | None | N |
L/S | 0.7578 | likely_pathogenic | 0.5041 | ambiguous | -0.897 | Destabilizing | 0.999 | D | 0.777 | deleterious | None | None | None | None | N |
L/T | 0.4863 | ambiguous | 0.2879 | benign | -0.845 | Destabilizing | 0.998 | D | 0.708 | prob.delet. | None | None | None | None | N |
L/V | 0.2041 | likely_benign | 0.1333 | benign | -0.596 | Destabilizing | 0.603 | D | 0.307 | neutral | N | 0.437116006 | None | None | N |
L/W | 0.8188 | likely_pathogenic | 0.6884 | pathogenic | -0.699 | Destabilizing | 1.0 | D | 0.763 | deleterious | None | None | None | None | N |
L/Y | 0.8142 | likely_pathogenic | 0.6659 | pathogenic | -0.476 | Destabilizing | 1.0 | D | 0.725 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.