Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14175 | 42748;42749;42750 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
N2AB | 12534 | 37825;37826;37827 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
N2A | 11607 | 35044;35045;35046 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
N2B | 5110 | 15553;15554;15555 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
Novex-1 | 5235 | 15928;15929;15930 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
Novex-2 | 5302 | 16129;16130;16131 | chr2:178633976;178633975;178633974 | chr2:179498703;179498702;179498701 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/C | rs575813993 | -1.491 | 0.97 | N | 0.569 | 0.295 | 0.714375579144 | gnomAD-2.1.1 | 4.83E-05 | None | None | None | None | N | None | 0 | 2.3183E-04 | None | 0 | 0 | None | 0 | None | 0 | 2.67E-05 | 1.65893E-04 |
F/C | rs575813993 | -1.491 | 0.97 | N | 0.569 | 0.295 | 0.714375579144 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 1.96799E-04 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
F/C | rs575813993 | -1.491 | 0.97 | N | 0.569 | 0.295 | 0.714375579144 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
F/C | rs575813993 | -1.491 | 0.97 | N | 0.569 | 0.295 | 0.714375579144 | gnomAD-4.0.0 | 5.57838E-05 | None | None | None | None | N | None | 1.33355E-05 | 2.16746E-04 | None | 0 | 0 | None | 0 | 3.30251E-04 | 5.68026E-05 | 0 | 1.12097E-04 |
F/S | rs575813993 | -2.81 | 0.549 | N | 0.578 | 0.27 | 0.664519762193 | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 1.65399E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
F/S | rs575813993 | -2.81 | 0.549 | N | 0.578 | 0.27 | 0.664519762193 | gnomAD-3.1.2 | 5.92E-05 | None | None | None | None | N | None | 2.17213E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
F/S | rs575813993 | -2.81 | 0.549 | N | 0.578 | 0.27 | 0.664519762193 | gnomAD-4.0.0 | 6.81852E-06 | None | None | None | None | N | None | 1.46929E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/A | 0.8469 | likely_pathogenic | 0.8789 | pathogenic | -2.796 | Highly Destabilizing | 0.447 | N | 0.57 | neutral | None | None | None | None | N |
F/C | 0.4588 | ambiguous | 0.4975 | ambiguous | -1.461 | Destabilizing | 0.97 | D | 0.569 | neutral | N | 0.454959534 | None | None | N |
F/D | 0.9271 | likely_pathogenic | 0.9562 | pathogenic | -2.413 | Highly Destabilizing | 0.972 | D | 0.629 | neutral | None | None | None | None | N |
F/E | 0.8672 | likely_pathogenic | 0.9045 | pathogenic | -2.284 | Highly Destabilizing | 0.92 | D | 0.624 | neutral | None | None | None | None | N |
F/G | 0.8957 | likely_pathogenic | 0.9302 | pathogenic | -3.176 | Highly Destabilizing | 0.766 | D | 0.613 | neutral | None | None | None | None | N |
F/H | 0.4921 | ambiguous | 0.5744 | pathogenic | -1.461 | Destabilizing | 0.85 | D | 0.599 | neutral | None | None | None | None | N |
F/I | 0.4954 | ambiguous | 0.4767 | ambiguous | -1.593 | Destabilizing | 0.173 | N | 0.571 | neutral | N | 0.47619935 | None | None | N |
F/K | 0.8375 | likely_pathogenic | 0.8883 | pathogenic | -1.684 | Destabilizing | 0.92 | D | 0.624 | neutral | None | None | None | None | N |
F/L | 0.8465 | likely_pathogenic | 0.8673 | pathogenic | -1.593 | Destabilizing | 0.201 | N | 0.522 | neutral | N | 0.415707821 | None | None | N |
F/M | 0.6375 | likely_pathogenic | 0.6529 | pathogenic | -1.161 | Destabilizing | 0.85 | D | 0.602 | neutral | None | None | None | None | N |
F/N | 0.7151 | likely_pathogenic | 0.7981 | pathogenic | -1.855 | Destabilizing | 0.92 | D | 0.627 | neutral | None | None | None | None | N |
F/P | 0.9992 | likely_pathogenic | 0.9995 | pathogenic | -1.998 | Destabilizing | 0.972 | D | 0.641 | neutral | None | None | None | None | N |
F/Q | 0.7465 | likely_pathogenic | 0.8144 | pathogenic | -1.96 | Destabilizing | 0.972 | D | 0.639 | neutral | None | None | None | None | N |
F/R | 0.7325 | likely_pathogenic | 0.8106 | pathogenic | -0.96 | Destabilizing | 0.92 | D | 0.627 | neutral | None | None | None | None | N |
F/S | 0.6536 | likely_pathogenic | 0.7002 | pathogenic | -2.584 | Highly Destabilizing | 0.549 | D | 0.578 | neutral | N | 0.458288059 | None | None | N |
F/T | 0.7595 | likely_pathogenic | 0.7995 | pathogenic | -2.361 | Highly Destabilizing | 0.617 | D | 0.565 | neutral | None | None | None | None | N |
F/V | 0.4861 | ambiguous | 0.4791 | ambiguous | -1.998 | Destabilizing | 0.004 | N | 0.319 | neutral | N | 0.45884486 | None | None | N |
F/W | 0.3936 | ambiguous | 0.4293 | ambiguous | -0.602 | Destabilizing | 0.92 | D | 0.591 | neutral | None | None | None | None | N |
F/Y | 0.0912 | likely_benign | 0.1133 | benign | -0.899 | Destabilizing | 0.001 | N | 0.201 | neutral | N | 0.362378376 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.