Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14280 | 43063;43064;43065 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
N2AB | 12639 | 38140;38141;38142 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
N2A | 11712 | 35359;35360;35361 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
N2B | 5215 | 15868;15869;15870 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
Novex-1 | 5340 | 16243;16244;16245 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
Novex-2 | 5407 | 16444;16445;16446 | chr2:178633521;178633520;178633519 | chr2:179498248;179498247;179498246 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/E | rs760643071 | 0.046 | 0.014 | N | 0.183 | 0.098 | 0.0762999501168 | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.35E-05 | 0 |
D/E | rs760643071 | 0.046 | 0.014 | N | 0.183 | 0.098 | 0.0762999501168 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
D/E | rs760643071 | 0.046 | 0.014 | N | 0.183 | 0.098 | 0.0762999501168 | gnomAD-4.0.0 | 1.59217E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85948E-06 | 0 | 0 |
D/G | rs181902304 | -0.409 | 0.698 | D | 0.371 | 0.424 | None | gnomAD-2.1.1 | 9.29E-05 | None | None | None | None | N | None | 4.13E-05 | 2.83094E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.09539E-04 | 0 |
D/G | rs181902304 | -0.409 | 0.698 | D | 0.371 | 0.424 | None | gnomAD-3.1.2 | 7.23E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47059E-04 | 0 | 0 |
D/G | rs181902304 | -0.409 | 0.698 | D | 0.371 | 0.424 | None | gnomAD-4.0.0 | 5.45471E-05 | None | None | None | None | N | None | 1.33522E-05 | 1.66789E-04 | None | 0 | 0 | None | 0 | 0 | 6.27327E-05 | 2.19587E-05 | 1.60174E-05 |
D/V | rs181902304 | 0.315 | 0.89 | D | 0.617 | 0.46 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.93199E-04 | None | 0 | 0 | 0 | 0 | 0 |
D/V | rs181902304 | 0.315 | 0.89 | D | 0.617 | 0.46 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
D/V | rs181902304 | 0.315 | 0.89 | D | 0.617 | 0.46 | None | gnomAD-4.0.0 | 6.56892E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.93648E-04 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1903 | likely_benign | 0.2334 | benign | -0.098 | Destabilizing | 0.014 | N | 0.307 | neutral | D | 0.60522681 | None | None | N |
D/C | 0.702 | likely_pathogenic | 0.779 | pathogenic | 0.112 | Stabilizing | 0.994 | D | 0.643 | neutral | None | None | None | None | N |
D/E | 0.1473 | likely_benign | 0.175 | benign | -0.243 | Destabilizing | 0.014 | N | 0.183 | neutral | N | 0.497609114 | None | None | N |
D/F | 0.6344 | likely_pathogenic | 0.6808 | pathogenic | -0.113 | Destabilizing | 0.978 | D | 0.639 | neutral | None | None | None | None | N |
D/G | 0.2642 | likely_benign | 0.2926 | benign | -0.261 | Destabilizing | 0.698 | D | 0.371 | neutral | D | 0.58949267 | None | None | N |
D/H | 0.3352 | likely_benign | 0.4578 | ambiguous | 0.185 | Stabilizing | 0.992 | D | 0.471 | neutral | D | 0.658616143 | None | None | N |
D/I | 0.3604 | ambiguous | 0.4473 | ambiguous | 0.272 | Stabilizing | 0.956 | D | 0.643 | neutral | None | None | None | None | N |
D/K | 0.3802 | ambiguous | 0.5245 | ambiguous | 0.527 | Stabilizing | 0.754 | D | 0.371 | neutral | None | None | None | None | N |
D/L | 0.4394 | ambiguous | 0.5346 | ambiguous | 0.272 | Stabilizing | 0.915 | D | 0.649 | neutral | None | None | None | None | N |
D/M | 0.6449 | likely_pathogenic | 0.7105 | pathogenic | 0.305 | Stabilizing | 0.998 | D | 0.647 | neutral | None | None | None | None | N |
D/N | 0.1225 | likely_benign | 0.1172 | benign | 0.228 | Stabilizing | 0.942 | D | 0.375 | neutral | D | 0.535932515 | None | None | N |
D/P | 0.8814 | likely_pathogenic | 0.9183 | pathogenic | 0.17 | Stabilizing | 0.978 | D | 0.461 | neutral | None | None | None | None | N |
D/Q | 0.3484 | ambiguous | 0.4717 | ambiguous | 0.249 | Stabilizing | 0.915 | D | 0.379 | neutral | None | None | None | None | N |
D/R | 0.4253 | ambiguous | 0.5965 | pathogenic | 0.666 | Stabilizing | 0.956 | D | 0.599 | neutral | None | None | None | None | N |
D/S | 0.1461 | likely_benign | 0.1563 | benign | 0.145 | Stabilizing | 0.754 | D | 0.311 | neutral | None | None | None | None | N |
D/T | 0.2654 | likely_benign | 0.3014 | benign | 0.276 | Stabilizing | 0.956 | D | 0.396 | neutral | None | None | None | None | N |
D/V | 0.2078 | likely_benign | 0.2663 | benign | 0.17 | Stabilizing | 0.89 | D | 0.617 | neutral | D | 0.60378267 | None | None | N |
D/W | 0.8787 | likely_pathogenic | 0.9261 | pathogenic | -0.023 | Destabilizing | 0.998 | D | 0.647 | neutral | None | None | None | None | N |
D/Y | 0.2637 | likely_benign | 0.3272 | benign | 0.126 | Stabilizing | 0.997 | D | 0.636 | neutral | D | 0.770873016 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.