Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14358 | 43297;43298;43299 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
N2AB | 12717 | 38374;38375;38376 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
N2A | 11790 | 35593;35594;35595 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
N2B | 5293 | 16102;16103;16104 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
Novex-1 | 5418 | 16477;16478;16479 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
Novex-2 | 5485 | 16678;16679;16680 | chr2:178633201;178633200;178633199 | chr2:179497928;179497927;179497926 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1200127540 | -1.388 | 0.999 | D | 0.779 | 0.304 | 0.351830644314 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 0 | 0 |
L/F | rs1200127540 | -1.388 | 0.999 | D | 0.779 | 0.304 | 0.351830644314 | gnomAD-4.0.0 | 1.59387E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.02939E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8534 | likely_pathogenic | 0.8378 | pathogenic | -2.254 | Highly Destabilizing | 0.998 | D | 0.779 | deleterious | None | None | None | None | N |
L/C | 0.8833 | likely_pathogenic | 0.8801 | pathogenic | -1.458 | Destabilizing | 1.0 | D | 0.832 | deleterious | None | None | None | None | N |
L/D | 0.9952 | likely_pathogenic | 0.9951 | pathogenic | -1.975 | Destabilizing | 1.0 | D | 0.858 | deleterious | None | None | None | None | N |
L/E | 0.953 | likely_pathogenic | 0.9522 | pathogenic | -1.825 | Destabilizing | 0.999 | D | 0.862 | deleterious | None | None | None | None | N |
L/F | 0.4179 | ambiguous | 0.3779 | ambiguous | -1.39 | Destabilizing | 0.999 | D | 0.779 | deleterious | D | 0.609781837 | None | None | N |
L/G | 0.9776 | likely_pathogenic | 0.9765 | pathogenic | -2.71 | Highly Destabilizing | 0.999 | D | 0.863 | deleterious | None | None | None | None | N |
L/H | 0.9043 | likely_pathogenic | 0.8997 | pathogenic | -1.834 | Destabilizing | 1.0 | D | 0.844 | deleterious | None | None | None | None | N |
L/I | 0.1296 | likely_benign | 0.1186 | benign | -0.98 | Destabilizing | 0.998 | D | 0.607 | neutral | None | None | None | None | N |
L/K | 0.8978 | likely_pathogenic | 0.8964 | pathogenic | -1.704 | Destabilizing | 0.999 | D | 0.863 | deleterious | None | None | None | None | N |
L/M | 0.2916 | likely_benign | 0.2606 | benign | -0.842 | Destabilizing | 0.999 | D | 0.739 | deleterious | D | 0.610815203 | None | None | N |
L/N | 0.9708 | likely_pathogenic | 0.976 | pathogenic | -1.814 | Destabilizing | 1.0 | D | 0.854 | deleterious | None | None | None | None | N |
L/P | 0.9704 | likely_pathogenic | 0.9704 | pathogenic | -1.381 | Destabilizing | 1.0 | D | 0.839 | deleterious | None | None | None | None | N |
L/Q | 0.8498 | likely_pathogenic | 0.8412 | pathogenic | -1.79 | Destabilizing | 1.0 | D | 0.864 | deleterious | None | None | None | None | N |
L/R | 0.8581 | likely_pathogenic | 0.8565 | pathogenic | -1.279 | Destabilizing | 0.999 | D | 0.869 | deleterious | None | None | None | None | N |
L/S | 0.9542 | likely_pathogenic | 0.9513 | pathogenic | -2.503 | Highly Destabilizing | 0.999 | D | 0.854 | deleterious | D | 0.650325893 | None | None | N |
L/T | 0.8748 | likely_pathogenic | 0.862 | pathogenic | -2.207 | Highly Destabilizing | 0.999 | D | 0.875 | deleterious | None | None | None | None | N |
L/V | 0.171 | likely_benign | 0.1558 | benign | -1.381 | Destabilizing | 0.997 | D | 0.648 | neutral | N | 0.495477938 | None | None | N |
L/W | 0.8271 | likely_pathogenic | 0.8071 | pathogenic | -1.571 | Destabilizing | 1.0 | D | 0.806 | deleterious | D | 0.652981016 | None | None | N |
L/Y | 0.8483 | likely_pathogenic | 0.8381 | pathogenic | -1.327 | Destabilizing | 0.999 | D | 0.867 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.