Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14580 | 43963;43964;43965 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
N2AB | 12939 | 39040;39041;39042 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
N2A | 12012 | 36259;36260;36261 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
N2B | 5515 | 16768;16769;16770 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
Novex-1 | 5640 | 17143;17144;17145 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
Novex-2 | 5707 | 17344;17345;17346 | chr2:178632156;178632155;178632154 | chr2:179496883;179496882;179496881 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs1381530830 | -0.828 | 0.958 | D | 0.499 | 0.667 | 0.4744847356 | gnomAD-2.1.1 | 4.34E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.52E-06 | 0 |
T/I | None | None | 0.142 | D | 0.254 | 0.402 | 0.478299402934 | gnomAD-4.0.0 | 1.64042E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.93719E-06 | 0 | 0 |
T/S | None | None | 0.979 | D | 0.506 | 0.593 | 0.381239546501 | gnomAD-4.0.0 | 1.64042E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.93719E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1586 | likely_benign | 0.1384 | benign | -0.931 | Destabilizing | 0.958 | D | 0.499 | neutral | D | 0.638976866 | None | None | N |
T/C | 0.6815 | likely_pathogenic | 0.6639 | pathogenic | -0.653 | Destabilizing | 1.0 | D | 0.692 | prob.neutral | None | None | None | None | N |
T/D | 0.5415 | ambiguous | 0.4383 | ambiguous | -0.505 | Destabilizing | 0.998 | D | 0.713 | prob.delet. | None | None | None | None | N |
T/E | 0.3949 | ambiguous | 0.3241 | benign | -0.483 | Destabilizing | 0.998 | D | 0.713 | prob.delet. | None | None | None | None | N |
T/F | 0.3165 | likely_benign | 0.259 | benign | -0.916 | Destabilizing | 0.991 | D | 0.717 | prob.delet. | None | None | None | None | N |
T/G | 0.6223 | likely_pathogenic | 0.5597 | ambiguous | -1.21 | Destabilizing | 0.995 | D | 0.667 | neutral | None | None | None | None | N |
T/H | 0.2974 | likely_benign | 0.2584 | benign | -1.449 | Destabilizing | 1.0 | D | 0.711 | prob.delet. | None | None | None | None | N |
T/I | 0.1838 | likely_benign | 0.1329 | benign | -0.268 | Destabilizing | 0.142 | N | 0.254 | neutral | D | 0.585329789 | None | None | N |
T/K | 0.2763 | likely_benign | 0.2325 | benign | -0.825 | Destabilizing | 0.995 | D | 0.714 | prob.delet. | None | None | None | None | N |
T/L | 0.1475 | likely_benign | 0.1224 | benign | -0.268 | Destabilizing | 0.839 | D | 0.511 | neutral | None | None | None | None | N |
T/M | 0.1034 | likely_benign | 0.1017 | benign | 0.026 | Stabilizing | 0.998 | D | 0.7 | prob.neutral | None | None | None | None | N |
T/N | 0.1875 | likely_benign | 0.1425 | benign | -0.857 | Destabilizing | 0.998 | D | 0.673 | neutral | D | 0.575811302 | None | None | N |
T/P | 0.6679 | likely_pathogenic | 0.6693 | pathogenic | -0.457 | Destabilizing | 0.998 | D | 0.71 | prob.delet. | D | 0.676393108 | None | None | N |
T/Q | 0.2951 | likely_benign | 0.2728 | benign | -1.023 | Destabilizing | 0.998 | D | 0.713 | prob.delet. | None | None | None | None | N |
T/R | 0.1901 | likely_benign | 0.1824 | benign | -0.586 | Destabilizing | 0.998 | D | 0.712 | prob.delet. | None | None | None | None | N |
T/S | 0.2121 | likely_benign | 0.185 | benign | -1.145 | Destabilizing | 0.979 | D | 0.506 | neutral | D | 0.618920845 | None | None | N |
T/V | 0.1959 | likely_benign | 0.1593 | benign | -0.457 | Destabilizing | 0.682 | D | 0.506 | neutral | None | None | None | None | N |
T/W | 0.6867 | likely_pathogenic | 0.6364 | pathogenic | -0.835 | Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
T/Y | 0.359 | ambiguous | 0.3178 | benign | -0.602 | Destabilizing | 0.995 | D | 0.723 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.