Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14592 | 43999;44000;44001 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
N2AB | 12951 | 39076;39077;39078 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
N2A | 12024 | 36295;36296;36297 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
N2B | 5527 | 16804;16805;16806 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
Novex-1 | 5652 | 17179;17180;17181 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
Novex-2 | 5719 | 17380;17381;17382 | chr2:178631274;178631273;178631272 | chr2:179496001;179496000;179495999 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1480406198 | -1.649 | 1.0 | D | 0.72 | 0.383 | 0.476832112026 | gnomAD-2.1.1 | 4.11E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.32E-05 | None | 0 | 0 | 0 |
L/F | rs1480406198 | -1.649 | 1.0 | D | 0.72 | 0.383 | 0.476832112026 | gnomAD-4.0.0 | 5.48673E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.07151E-05 | None | 0 | 0 | 0 | 5.82289E-05 | 1.66014E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9385 | likely_pathogenic | 0.958 | pathogenic | -1.989 | Destabilizing | 0.999 | D | 0.721 | prob.delet. | None | None | None | None | N |
L/C | 0.9598 | likely_pathogenic | 0.9779 | pathogenic | -1.608 | Destabilizing | 1.0 | D | 0.826 | deleterious | None | None | None | None | N |
L/D | 0.9977 | likely_pathogenic | 0.9985 | pathogenic | -1.255 | Destabilizing | 1.0 | D | 0.905 | deleterious | None | None | None | None | N |
L/E | 0.9854 | likely_pathogenic | 0.9905 | pathogenic | -1.187 | Destabilizing | 1.0 | D | 0.902 | deleterious | None | None | None | None | N |
L/F | 0.7745 | likely_pathogenic | 0.8458 | pathogenic | -1.399 | Destabilizing | 1.0 | D | 0.72 | prob.delet. | D | 0.626379875 | None | None | N |
L/G | 0.9865 | likely_pathogenic | 0.9912 | pathogenic | -2.377 | Highly Destabilizing | 1.0 | D | 0.896 | deleterious | None | None | None | None | N |
L/H | 0.9777 | likely_pathogenic | 0.9873 | pathogenic | -1.571 | Destabilizing | 1.0 | D | 0.881 | deleterious | D | 0.651937956 | None | None | N |
L/I | 0.2299 | likely_benign | 0.3073 | benign | -0.955 | Destabilizing | 0.999 | D | 0.519 | neutral | D | 0.56142547 | None | None | N |
L/K | 0.979 | likely_pathogenic | 0.9859 | pathogenic | -1.222 | Destabilizing | 1.0 | D | 0.875 | deleterious | None | None | None | None | N |
L/M | 0.4187 | ambiguous | 0.5104 | ambiguous | -0.941 | Destabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | N |
L/N | 0.9866 | likely_pathogenic | 0.9907 | pathogenic | -1.145 | Destabilizing | 1.0 | D | 0.907 | deleterious | None | None | None | None | N |
L/P | 0.8805 | likely_pathogenic | 0.9177 | pathogenic | -1.272 | Destabilizing | 1.0 | D | 0.908 | deleterious | N | 0.433099079 | None | None | N |
L/Q | 0.9561 | likely_pathogenic | 0.9739 | pathogenic | -1.259 | Destabilizing | 1.0 | D | 0.897 | deleterious | None | None | None | None | N |
L/R | 0.963 | likely_pathogenic | 0.9753 | pathogenic | -0.769 | Destabilizing | 1.0 | D | 0.891 | deleterious | D | 0.66521297 | None | None | N |
L/S | 0.9855 | likely_pathogenic | 0.9922 | pathogenic | -1.941 | Destabilizing | 1.0 | D | 0.869 | deleterious | None | None | None | None | N |
L/T | 0.9418 | likely_pathogenic | 0.9634 | pathogenic | -1.74 | Destabilizing | 1.0 | D | 0.809 | deleterious | None | None | None | None | N |
L/V | 0.3882 | ambiguous | 0.4881 | ambiguous | -1.272 | Destabilizing | 0.999 | D | 0.502 | neutral | D | 0.591145029 | None | None | N |
L/W | 0.9511 | likely_pathogenic | 0.9753 | pathogenic | -1.457 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
L/Y | 0.9765 | likely_pathogenic | 0.9866 | pathogenic | -1.213 | Destabilizing | 1.0 | D | 0.865 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.