Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14693 | 44302;44303;44304 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
N2AB | 13052 | 39379;39380;39381 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
N2A | 12125 | 36598;36599;36600 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
N2B | 5628 | 17107;17108;17109 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
Novex-1 | 5753 | 17482;17483;17484 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
Novex-2 | 5820 | 17683;17684;17685 | chr2:178630881;178630880;178630879 | chr2:179495608;179495607;179495606 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs200445568 | -0.114 | 1.0 | N | 0.613 | 0.369 | None | gnomAD-2.1.1 | 2.32251E-04 | None | None | None | None | N | None | 2.35693E-03 | 1.41483E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.56E-05 | 0 |
R/C | rs200445568 | -0.114 | 1.0 | N | 0.613 | 0.369 | None | gnomAD-3.1.2 | 7.56479E-04 | None | None | None | None | N | None | 2.51123E-03 | 4.59559E-04 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 1.43678E-03 |
R/C | rs200445568 | -0.114 | 1.0 | N | 0.613 | 0.369 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 2.3E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs200445568 | -0.114 | 1.0 | N | 0.613 | 0.369 | None | gnomAD-4.0.0 | 1.50009E-04 | None | None | None | None | N | None | 2.50733E-03 | 2.33505E-04 | None | 0 | 0 | None | 0 | 1.65235E-04 | 1.27171E-05 | 4.393E-05 | 3.20277E-04 |
R/H | rs746380621 | -0.659 | 1.0 | N | 0.644 | 0.291 | 0.146414634003 | gnomAD-2.1.1 | 6.79E-05 | None | None | None | None | N | None | 0 | 2.83E-05 | None | 9.67E-05 | 6.71141E-04 | None | 6.54E-05 | None | 0 | 7.81E-06 | 1.40568E-04 |
R/H | rs746380621 | -0.659 | 1.0 | N | 0.644 | 0.291 | 0.146414634003 | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 2.88517E-04 | 3.87747E-04 | None | 0 | 0 | 4.41E-05 | 2.06954E-04 | 0 |
R/H | rs746380621 | -0.659 | 1.0 | N | 0.644 | 0.291 | 0.146414634003 | gnomAD-4.0.0 | 4.71128E-05 | None | None | None | None | N | None | 2.67058E-05 | 5.0045E-05 | None | 4.05625E-04 | 4.69211E-04 | None | 0 | 0 | 1.69563E-05 | 1.31775E-04 | 9.612E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3385 | likely_benign | 0.3121 | benign | -0.141 | Destabilizing | 0.926 | D | 0.605 | neutral | None | None | None | None | N |
R/C | 0.1 | likely_benign | 0.0992 | benign | -0.271 | Destabilizing | 1.0 | D | 0.613 | neutral | N | 0.43742205 | None | None | N |
R/D | 0.5814 | likely_pathogenic | 0.5161 | ambiguous | -0.037 | Destabilizing | 0.995 | D | 0.614 | neutral | None | None | None | None | N |
R/E | 0.3291 | likely_benign | 0.3194 | benign | 0.064 | Stabilizing | 0.968 | D | 0.631 | neutral | None | None | None | None | N |
R/F | 0.279 | likely_benign | 0.2961 | benign | -0.178 | Destabilizing | 0.998 | D | 0.632 | neutral | None | None | None | None | N |
R/G | 0.3119 | likely_benign | 0.249 | benign | -0.394 | Destabilizing | 0.992 | D | 0.611 | neutral | N | 0.455962868 | None | None | N |
R/H | 0.0576 | likely_benign | 0.0617 | benign | -0.875 | Destabilizing | 1.0 | D | 0.644 | neutral | N | 0.45518166 | None | None | N |
R/I | 0.1442 | likely_benign | 0.1597 | benign | 0.508 | Stabilizing | 0.991 | D | 0.653 | prob.neutral | None | None | None | None | N |
R/K | 0.1122 | likely_benign | 0.1319 | benign | -0.195 | Destabilizing | 0.29 | N | 0.379 | neutral | None | None | None | None | N |
R/L | 0.1573 | likely_benign | 0.1482 | benign | 0.508 | Stabilizing | 0.983 | D | 0.603 | neutral | N | 0.413831451 | None | None | N |
R/M | 0.2557 | likely_benign | 0.2765 | benign | -0.008 | Destabilizing | 1.0 | D | 0.613 | neutral | None | None | None | None | N |
R/N | 0.3787 | ambiguous | 0.3521 | ambiguous | 0.043 | Stabilizing | 0.984 | D | 0.639 | neutral | None | None | None | None | N |
R/P | 0.9012 | likely_pathogenic | 0.8227 | pathogenic | 0.313 | Stabilizing | 0.999 | D | 0.665 | prob.neutral | N | 0.497001032 | None | None | N |
R/Q | 0.0984 | likely_benign | 0.1001 | benign | -0.024 | Destabilizing | 0.991 | D | 0.664 | prob.neutral | None | None | None | None | N |
R/S | 0.314 | likely_benign | 0.2934 | benign | -0.401 | Destabilizing | 0.967 | D | 0.593 | neutral | N | 0.433877692 | None | None | N |
R/T | 0.153 | likely_benign | 0.1662 | benign | -0.139 | Destabilizing | 0.29 | N | 0.479 | neutral | None | None | None | None | N |
R/V | 0.1904 | likely_benign | 0.2214 | benign | 0.313 | Stabilizing | 0.991 | D | 0.601 | neutral | None | None | None | None | N |
R/W | 0.1227 | likely_benign | 0.1188 | benign | -0.126 | Destabilizing | 1.0 | D | 0.635 | neutral | None | None | None | None | N |
R/Y | 0.1928 | likely_benign | 0.1926 | benign | 0.253 | Stabilizing | 0.998 | D | 0.649 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.