Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14737 | 44434;44435;44436 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
N2AB | 13096 | 39511;39512;39513 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
N2A | 12169 | 36730;36731;36732 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
N2B | 5672 | 17239;17240;17241 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
Novex-1 | 5797 | 17614;17615;17616 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
Novex-2 | 5864 | 17815;17816;17817 | chr2:178630313;178630312;178630311 | chr2:179495040;179495039;179495038 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs748593243 | -0.171 | 0.999 | D | 0.365 | 0.341 | 0.432493127443 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.66168E-04 |
R/C | rs748593243 | -0.171 | 0.999 | D | 0.365 | 0.341 | 0.432493127443 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs748593243 | -0.171 | 0.999 | D | 0.365 | 0.341 | 0.432493127443 | gnomAD-4.0.0 | 6.20039E-06 | None | None | None | None | N | None | 1.3364E-05 | 3.337E-05 | None | 0 | 0 | None | 3.12735E-05 | 0 | 4.23945E-06 | 0 | 0 |
R/H | rs373298007 | -1.211 | 0.071 | N | 0.187 | 0.119 | None | gnomAD-2.1.1 | 1.39432E-04 | None | None | None | None | N | None | 3.72116E-04 | 6.23866E-04 | None | 0 | 5.18E-05 | None | 6.55E-05 | None | 4E-05 | 3.13E-05 | 0 |
R/H | rs373298007 | -1.211 | 0.071 | N | 0.187 | 0.119 | None | gnomAD-3.1.2 | 1.57924E-04 | None | None | None | None | N | None | 4.58915E-04 | 2.62433E-04 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs373298007 | -1.211 | 0.071 | N | 0.187 | 0.119 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 8E-04 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs373298007 | -1.211 | 0.071 | N | 0.187 | 0.119 | None | gnomAD-4.0.0 | 5.14578E-05 | None | None | None | None | N | None | 3.33538E-04 | 4.50375E-04 | None | 0 | 0 | None | 0 | 0 | 2.03492E-05 | 6.59181E-05 | 1.60159E-05 |
R/L | rs373298007 | 0.334 | 0.015 | N | 0.272 | 0.172 | None | gnomAD-2.1.1 | 2.03785E-04 | None | None | None | None | N | None | 8.27E-05 | 0 | None | 0 | 2.69179E-03 | None | 3.27E-05 | None | 0 | 7.82E-06 | 1.40647E-04 |
R/L | rs373298007 | 0.334 | 0.015 | N | 0.272 | 0.172 | None | gnomAD-3.1.2 | 1.31603E-04 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 3.1068E-03 | None | 0 | 0 | 0 | 2.07297E-04 | 4.78469E-04 |
R/L | rs373298007 | 0.334 | 0.015 | N | 0.272 | 0.172 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 3E-03 | 0 | None | None | None | 0 | None |
R/L | rs373298007 | 0.334 | 0.015 | N | 0.272 | 0.172 | None | gnomAD-4.0.0 | 6.88171E-05 | None | None | None | None | N | None | 8.00491E-05 | 0 | None | 0 | 2.10347E-03 | None | 0 | 0 | 8.47883E-07 | 3.29591E-05 | 1.12111E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4445 | ambiguous | 0.4503 | ambiguous | -0.204 | Destabilizing | 0.505 | D | 0.365 | neutral | None | None | None | None | N |
R/C | 0.1335 | likely_benign | 0.1355 | benign | 0.014 | Stabilizing | 0.999 | D | 0.365 | neutral | D | 0.53196314 | None | None | N |
R/D | 0.6629 | likely_pathogenic | 0.6901 | pathogenic | 0.093 | Stabilizing | 0.712 | D | 0.405 | neutral | None | None | None | None | N |
R/E | 0.444 | ambiguous | 0.4372 | ambiguous | 0.199 | Stabilizing | 0.505 | D | 0.252 | neutral | None | None | None | None | N |
R/F | 0.4347 | ambiguous | 0.4614 | ambiguous | -0.13 | Destabilizing | 0.897 | D | 0.426 | neutral | None | None | None | None | N |
R/G | 0.2681 | likely_benign | 0.2681 | benign | -0.497 | Destabilizing | 0.826 | D | 0.402 | neutral | N | 0.418546185 | None | None | N |
R/H | 0.0788 | likely_benign | 0.0794 | benign | -1.054 | Destabilizing | 0.071 | N | 0.187 | neutral | N | 0.419742531 | None | None | N |
R/I | 0.3046 | likely_benign | 0.3374 | benign | 0.565 | Stabilizing | 0.553 | D | 0.433 | neutral | None | None | None | None | N |
R/K | 0.1098 | likely_benign | 0.1102 | benign | -0.172 | Destabilizing | 0.014 | N | 0.156 | neutral | None | None | None | None | N |
R/L | 0.2039 | likely_benign | 0.2119 | benign | 0.565 | Stabilizing | 0.015 | N | 0.272 | neutral | N | 0.465435133 | None | None | N |
R/M | 0.3237 | likely_benign | 0.349 | ambiguous | 0.204 | Stabilizing | 0.897 | D | 0.395 | neutral | None | None | None | None | N |
R/N | 0.4999 | ambiguous | 0.5282 | ambiguous | 0.347 | Stabilizing | 0.712 | D | 0.21 | neutral | None | None | None | None | N |
R/P | 0.7929 | likely_pathogenic | 0.7931 | pathogenic | 0.331 | Stabilizing | 0.99 | D | 0.434 | neutral | D | 0.531768966 | None | None | N |
R/Q | 0.0989 | likely_benign | 0.0984 | benign | 0.213 | Stabilizing | 0.712 | D | 0.317 | neutral | None | None | None | None | N |
R/S | 0.432 | ambiguous | 0.445 | ambiguous | -0.193 | Destabilizing | 0.826 | D | 0.33 | neutral | N | 0.425455715 | None | None | N |
R/T | 0.2726 | likely_benign | 0.282 | benign | 0.081 | Stabilizing | 0.834 | D | 0.333 | neutral | None | None | None | None | N |
R/V | 0.3741 | ambiguous | 0.4086 | ambiguous | 0.331 | Stabilizing | 0.553 | D | 0.384 | neutral | None | None | None | None | N |
R/W | 0.1842 | likely_benign | 0.1798 | benign | 0.028 | Stabilizing | 0.995 | D | 0.385 | neutral | None | None | None | None | N |
R/Y | 0.3234 | likely_benign | 0.3417 | ambiguous | 0.374 | Stabilizing | 0.897 | D | 0.441 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.