Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15018 | 45277;45278;45279 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
N2AB | 13377 | 40354;40355;40356 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
N2A | 12450 | 37573;37574;37575 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
N2B | 5953 | 18082;18083;18084 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
Novex-1 | 6078 | 18457;18458;18459 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
Novex-2 | 6145 | 18658;18659;18660 | chr2:178621870;178621869;178621868 | chr2:179486597;179486596;179486595 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/E | rs72677221 | -1.039 | 0.991 | N | 0.607 | 0.334 | 0.413241256734 | gnomAD-2.1.1 | 1.21904E-04 | None | None | None | None | N | None | 0 | 7.39645E-04 | None | 0 | 0 | None | 0 | None | 4.01E-05 | 5.49E-05 | 0 |
A/E | rs72677221 | -1.039 | 0.991 | N | 0.607 | 0.334 | 0.413241256734 | gnomAD-3.1.2 | 1.98E-05 | None | None | None | None | N | None | 0 | 1.97135E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
A/E | rs72677221 | -1.039 | 0.991 | N | 0.607 | 0.334 | 0.413241256734 | gnomAD-4.0.0 | 3.22591E-05 | None | None | None | None | N | None | 0 | 5.35117E-04 | None | 0 | 0 | None | 4.69307E-05 | 0 | 1.35713E-05 | 0 | 1.60344E-05 |
A/G | None | None | 0.979 | N | 0.518 | 0.269 | 0.34854441366 | gnomAD-4.0.0 | 6.84892E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.00059E-07 | 0 | 0 |
A/V | rs72677221 | -0.305 | 0.998 | N | 0.563 | 0.22 | None | gnomAD-2.1.1 | 7.74449E-04 | None | None | None | None | N | None | 4.14E-05 | 5.66113E-03 | None | 0 | 0 | None | 0 | None | 0 | 7.85E-05 | 8.46501E-04 |
A/V | rs72677221 | -0.305 | 0.998 | N | 0.563 | 0.22 | None | gnomAD-3.1.2 | 4.08255E-04 | None | None | None | None | N | None | 7.25E-05 | 3.67985E-03 | 0 | 0 | 1.95084E-04 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
A/V | rs72677221 | -0.305 | 0.998 | N | 0.563 | 0.22 | None | 1000 genomes | 1.79712E-03 | None | None | None | None | N | None | 0 | 1.15E-02 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
A/V | rs72677221 | -0.305 | 0.998 | N | 0.563 | 0.22 | None | gnomAD-4.0.0 | 2.25177E-04 | None | None | None | None | N | None | 5.33974E-05 | 4.9985E-03 | None | 0 | 8.97344E-05 | None | 0 | 0 | 3.30802E-05 | 2.19775E-05 | 2.40431E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.6079 | likely_pathogenic | 0.6082 | pathogenic | -0.571 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | N |
A/D | 0.4689 | ambiguous | 0.4943 | ambiguous | -0.671 | Destabilizing | 0.995 | D | 0.623 | neutral | None | None | None | None | N |
A/E | 0.3785 | ambiguous | 0.4076 | ambiguous | -0.715 | Destabilizing | 0.991 | D | 0.607 | neutral | N | 0.455868797 | None | None | N |
A/F | 0.5031 | ambiguous | 0.5393 | ambiguous | -0.78 | Destabilizing | 0.999 | D | 0.685 | prob.neutral | None | None | None | None | N |
A/G | 0.1907 | likely_benign | 0.2105 | benign | -0.852 | Destabilizing | 0.979 | D | 0.518 | neutral | N | 0.453745352 | None | None | N |
A/H | 0.6186 | likely_pathogenic | 0.662 | pathogenic | -1.05 | Destabilizing | 1.0 | D | 0.669 | neutral | None | None | None | None | N |
A/I | 0.4548 | ambiguous | 0.4674 | ambiguous | -0.154 | Destabilizing | 0.998 | D | 0.681 | prob.neutral | None | None | None | None | N |
A/K | 0.6327 | likely_pathogenic | 0.6594 | pathogenic | -0.903 | Destabilizing | 0.983 | D | 0.619 | neutral | None | None | None | None | N |
A/L | 0.3253 | likely_benign | 0.3636 | ambiguous | -0.154 | Destabilizing | 0.992 | D | 0.587 | neutral | None | None | None | None | N |
A/M | 0.3831 | ambiguous | 0.4015 | ambiguous | -0.17 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | N |
A/N | 0.4074 | ambiguous | 0.4464 | ambiguous | -0.584 | Destabilizing | 0.995 | D | 0.632 | neutral | None | None | None | None | N |
A/P | 0.8293 | likely_pathogenic | 0.8858 | pathogenic | -0.268 | Destabilizing | 0.997 | D | 0.685 | prob.neutral | N | 0.492466166 | None | None | N |
A/Q | 0.4225 | ambiguous | 0.4596 | ambiguous | -0.727 | Destabilizing | 0.998 | D | 0.705 | prob.neutral | None | None | None | None | N |
A/R | 0.5426 | ambiguous | 0.5801 | pathogenic | -0.608 | Destabilizing | 0.998 | D | 0.703 | prob.neutral | None | None | None | None | N |
A/S | 0.0959 | likely_benign | 0.1001 | benign | -0.907 | Destabilizing | 0.418 | N | 0.28 | neutral | N | 0.422225019 | None | None | N |
A/T | 0.125 | likely_benign | 0.129 | benign | -0.855 | Destabilizing | 0.956 | D | 0.52 | neutral | N | 0.472362325 | None | None | N |
A/V | 0.222 | likely_benign | 0.2353 | benign | -0.268 | Destabilizing | 0.998 | D | 0.563 | neutral | N | 0.434229665 | None | None | N |
A/W | 0.8528 | likely_pathogenic | 0.8889 | pathogenic | -1.131 | Destabilizing | 1.0 | D | 0.672 | neutral | None | None | None | None | N |
A/Y | 0.6522 | likely_pathogenic | 0.6958 | pathogenic | -0.7 | Destabilizing | 0.999 | D | 0.679 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.