Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15272 | 46039;46040;46041 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
N2AB | 13631 | 41116;41117;41118 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
N2A | 12704 | 38335;38336;38337 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
N2B | 6207 | 18844;18845;18846 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
Novex-1 | 6332 | 19219;19220;19221 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
Novex-2 | 6399 | 19420;19421;19422 | chr2:178620796;178620795;178620794 | chr2:179485523;179485522;179485521 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/E | rs540340364 | -0.103 | 0.007 | N | 0.183 | 0.083 | 0.0297737177859 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.94E-06 | 0 |
D/E | rs540340364 | -0.103 | 0.007 | N | 0.183 | 0.083 | 0.0297737177859 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
D/E | rs540340364 | -0.103 | 0.007 | N | 0.183 | 0.083 | 0.0297737177859 | gnomAD-4.0.0 | 1.59335E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86264E-06 | 0 | 0 |
D/G | None | None | 0.001 | N | 0.135 | 0.148 | 0.146414634003 | gnomAD-4.0.0 | 1.59333E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86261E-06 | 0 | 0 |
D/N | rs559878591 | 0.028 | 0.001 | N | 0.105 | 0.09 | 0.0954503805726 | gnomAD-2.1.1 | 2.15E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 3.08801E-04 | None | 0 | None | 0 | 0 | 0 |
D/N | rs559878591 | 0.028 | 0.001 | N | 0.105 | 0.09 | 0.0954503805726 | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 9.73141E-04 | None | 0 | 0 | 0 | 0 | 0 |
D/N | rs559878591 | 0.028 | 0.001 | N | 0.105 | 0.09 | 0.0954503805726 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
D/N | rs559878591 | 0.028 | 0.001 | N | 0.105 | 0.09 | 0.0954503805726 | gnomAD-4.0.0 | 8.68073E-06 | None | None | None | None | N | None | 0 | 6.67379E-05 | None | 0 | 2.23364E-04 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1125 | likely_benign | 0.1245 | benign | -0.209 | Destabilizing | 0.101 | N | 0.337 | neutral | N | 0.449184211 | None | None | N |
D/C | 0.5732 | likely_pathogenic | 0.5892 | pathogenic | 0.014 | Stabilizing | 0.983 | D | 0.309 | neutral | None | None | None | None | N |
D/E | 0.1338 | likely_benign | 0.1551 | benign | -0.281 | Destabilizing | 0.007 | N | 0.183 | neutral | N | 0.42453775 | None | None | N |
D/F | 0.5412 | ambiguous | 0.5526 | ambiguous | -0.204 | Destabilizing | 0.94 | D | 0.321 | neutral | None | None | None | None | N |
D/G | 0.1158 | likely_benign | 0.1207 | benign | -0.372 | Destabilizing | 0.001 | N | 0.135 | neutral | N | 0.453121028 | None | None | N |
D/H | 0.2218 | likely_benign | 0.2336 | benign | 0.104 | Stabilizing | 0.655 | D | 0.273 | neutral | N | 0.506476346 | None | None | N |
D/I | 0.3151 | likely_benign | 0.3433 | ambiguous | 0.164 | Stabilizing | 0.836 | D | 0.339 | neutral | None | None | None | None | N |
D/K | 0.2261 | likely_benign | 0.2436 | benign | 0.391 | Stabilizing | 0.002 | N | 0.182 | neutral | None | None | None | None | N |
D/L | 0.3014 | likely_benign | 0.3219 | benign | 0.164 | Stabilizing | 0.418 | N | 0.368 | neutral | None | None | None | None | N |
D/M | 0.5559 | ambiguous | 0.6047 | pathogenic | 0.222 | Stabilizing | 0.983 | D | 0.306 | neutral | None | None | None | None | N |
D/N | 0.0909 | likely_benign | 0.0995 | benign | 0.092 | Stabilizing | 0.001 | N | 0.105 | neutral | N | 0.447929989 | None | None | N |
D/P | 0.5219 | ambiguous | 0.5422 | ambiguous | 0.061 | Stabilizing | 0.836 | D | 0.327 | neutral | None | None | None | None | N |
D/Q | 0.2465 | likely_benign | 0.2723 | benign | 0.117 | Stabilizing | 0.418 | N | 0.274 | neutral | None | None | None | None | N |
D/R | 0.2568 | likely_benign | 0.2658 | benign | 0.561 | Stabilizing | 0.264 | N | 0.362 | neutral | None | None | None | None | N |
D/S | 0.0989 | likely_benign | 0.1055 | benign | 0.002 | Stabilizing | 0.027 | N | 0.185 | neutral | None | None | None | None | N |
D/T | 0.2066 | likely_benign | 0.2304 | benign | 0.133 | Stabilizing | 0.264 | N | 0.312 | neutral | None | None | None | None | N |
D/V | 0.1816 | likely_benign | 0.1968 | benign | 0.061 | Stabilizing | 0.523 | D | 0.361 | neutral | N | 0.467997839 | None | None | N |
D/W | 0.8205 | likely_pathogenic | 0.8252 | pathogenic | -0.098 | Destabilizing | 0.983 | D | 0.382 | neutral | None | None | None | None | N |
D/Y | 0.2039 | likely_benign | 0.2115 | benign | 0.028 | Stabilizing | 0.921 | D | 0.322 | neutral | N | 0.507817502 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.