Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15543 | 46852;46853;46854 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
N2AB | 13902 | 41929;41930;41931 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
N2A | 12975 | 39148;39149;39150 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
N2B | 6478 | 19657;19658;19659 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
Novex-1 | 6603 | 20032;20033;20034 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
Novex-2 | 6670 | 20233;20234;20235 | chr2:178619690;178619689;178619688 | chr2:179484417;179484416;179484415 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/S | None | None | 1.0 | D | 0.686 | 0.547 | 0.557405679382 | gnomAD-4.0.0 | 1.59436E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86441E-06 | 0 | 0 |
P/T | None | None | 0.999 | D | 0.651 | 0.502 | 0.584148673918 | gnomAD-4.0.0 | 1.59436E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.78056E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.1695 | likely_benign | 0.1776 | benign | -0.842 | Destabilizing | 0.998 | D | 0.563 | neutral | D | 0.589519459 | None | None | N |
P/C | 0.8964 | likely_pathogenic | 0.9062 | pathogenic | -0.557 | Destabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | N |
P/D | 0.8077 | likely_pathogenic | 0.7821 | pathogenic | -0.962 | Destabilizing | 1.0 | D | 0.673 | neutral | None | None | None | None | N |
P/E | 0.5682 | likely_pathogenic | 0.5426 | ambiguous | -1.038 | Destabilizing | 1.0 | D | 0.689 | prob.neutral | None | None | None | None | N |
P/F | 0.8233 | likely_pathogenic | 0.8263 | pathogenic | -0.891 | Destabilizing | 1.0 | D | 0.731 | prob.delet. | None | None | None | None | N |
P/G | 0.613 | likely_pathogenic | 0.5917 | pathogenic | -1.038 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | N |
P/H | 0.5327 | ambiguous | 0.5368 | ambiguous | -0.623 | Destabilizing | 1.0 | D | 0.684 | prob.neutral | D | 0.587152048 | None | None | N |
P/I | 0.6132 | likely_pathogenic | 0.6058 | pathogenic | -0.441 | Destabilizing | 0.998 | D | 0.721 | prob.delet. | None | None | None | None | N |
P/K | 0.6585 | likely_pathogenic | 0.6242 | pathogenic | -0.85 | Destabilizing | 1.0 | D | 0.693 | prob.neutral | None | None | None | None | N |
P/L | 0.2945 | likely_benign | 0.292 | benign | -0.441 | Destabilizing | 0.64 | D | 0.478 | neutral | D | 0.528904415 | None | None | N |
P/M | 0.6099 | likely_pathogenic | 0.6013 | pathogenic | -0.396 | Destabilizing | 1.0 | D | 0.702 | prob.neutral | None | None | None | None | N |
P/N | 0.7081 | likely_pathogenic | 0.6879 | pathogenic | -0.507 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | None | None | None | None | N |
P/Q | 0.371 | ambiguous | 0.3563 | ambiguous | -0.744 | Destabilizing | 1.0 | D | 0.704 | prob.neutral | None | None | None | None | N |
P/R | 0.4807 | ambiguous | 0.4565 | ambiguous | -0.276 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | D | 0.549329816 | None | None | N |
P/S | 0.3425 | ambiguous | 0.3505 | ambiguous | -0.823 | Destabilizing | 1.0 | D | 0.686 | prob.neutral | D | 0.548148029 | None | None | N |
P/T | 0.3165 | likely_benign | 0.3225 | benign | -0.804 | Destabilizing | 0.999 | D | 0.651 | neutral | D | 0.527927114 | None | None | N |
P/V | 0.4256 | ambiguous | 0.4249 | ambiguous | -0.54 | Destabilizing | 0.998 | D | 0.625 | neutral | None | None | None | None | N |
P/W | 0.9061 | likely_pathogenic | 0.8997 | pathogenic | -1.02 | Destabilizing | 1.0 | D | 0.72 | prob.delet. | None | None | None | None | N |
P/Y | 0.7523 | likely_pathogenic | 0.7514 | pathogenic | -0.742 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.