Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15643 | 47152;47153;47154 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
N2AB | 14002 | 42229;42230;42231 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
N2A | 13075 | 39448;39449;39450 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
N2B | 6578 | 19957;19958;19959 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
Novex-1 | 6703 | 20332;20333;20334 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
Novex-2 | 6770 | 20533;20534;20535 | chr2:178618623;178618622;178618621 | chr2:179483350;179483349;179483348 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/Q | rs770655963 | 0.282 | 0.995 | N | 0.535 | 0.253 | 0.394384168047 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 2.91E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
H/Q | rs770655963 | 0.282 | 0.995 | N | 0.535 | 0.253 | 0.394384168047 | gnomAD-4.0.0 | 2.73946E-06 | None | None | None | None | I | None | 0 | 8.96982E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
H/R | rs368502650 | 0.045 | 0.984 | N | 0.52 | 0.508 | None | gnomAD-2.1.1 | 2.184E-04 | None | None | None | None | I | None | 1.65549E-04 | 3.97682E-04 | None | 1.25896E-03 | 0 | None | 0 | None | 0 | 2.19315E-04 | 2.81532E-04 |
H/R | rs368502650 | 0.045 | 0.984 | N | 0.52 | 0.508 | None | gnomAD-3.1.2 | 2.36904E-04 | None | None | None | None | I | None | 7.24E-05 | 4.59318E-04 | 0 | 1.7311E-03 | 0 | None | 0 | 0 | 2.94516E-04 | 0 | 0 |
H/R | rs368502650 | 0.045 | 0.984 | N | 0.52 | 0.508 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
H/R | rs368502650 | 0.045 | 0.984 | N | 0.52 | 0.508 | None | gnomAD-4.0.0 | 2.72903E-04 | None | None | None | None | I | None | 1.06806E-04 | 3.67438E-04 | None | 1.28613E-03 | 0 | None | 0 | 0 | 2.87527E-04 | 0 | 5.2888E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.5172 | ambiguous | 0.588 | pathogenic | 0.571 | Stabilizing | 0.919 | D | 0.587 | neutral | None | None | None | None | I |
H/C | 0.275 | likely_benign | 0.3557 | ambiguous | 0.783 | Stabilizing | 0.999 | D | 0.664 | neutral | None | None | None | None | I |
H/D | 0.6004 | likely_pathogenic | 0.6622 | pathogenic | -0.157 | Destabilizing | 0.995 | D | 0.538 | neutral | N | 0.504327812 | None | None | I |
H/E | 0.6157 | likely_pathogenic | 0.6618 | pathogenic | -0.152 | Destabilizing | 0.959 | D | 0.525 | neutral | None | None | None | None | I |
H/F | 0.2115 | likely_benign | 0.245 | benign | 1.068 | Stabilizing | 0.952 | D | 0.523 | neutral | None | None | None | None | I |
H/G | 0.6412 | likely_pathogenic | 0.7181 | pathogenic | 0.34 | Stabilizing | 0.959 | D | 0.541 | neutral | None | None | None | None | I |
H/I | 0.4838 | ambiguous | 0.5669 | pathogenic | 1.14 | Stabilizing | 0.976 | D | 0.629 | neutral | None | None | None | None | I |
H/K | 0.6335 | likely_pathogenic | 0.6569 | pathogenic | 0.477 | Stabilizing | 0.988 | D | 0.519 | neutral | None | None | None | None | I |
H/L | 0.2374 | likely_benign | 0.2876 | benign | 1.14 | Stabilizing | 0.811 | D | 0.555 | neutral | N | 0.496986948 | None | None | I |
H/M | 0.6428 | likely_pathogenic | 0.6992 | pathogenic | 0.805 | Stabilizing | 0.999 | D | 0.634 | neutral | None | None | None | None | I |
H/N | 0.1982 | likely_benign | 0.2261 | benign | 0.393 | Stabilizing | 0.946 | D | 0.52 | neutral | N | 0.50411833 | None | None | I |
H/P | 0.8205 | likely_pathogenic | 0.8541 | pathogenic | 0.975 | Stabilizing | 0.995 | D | 0.62 | neutral | N | 0.504327812 | None | None | I |
H/Q | 0.4139 | ambiguous | 0.4746 | ambiguous | 0.455 | Stabilizing | 0.995 | D | 0.535 | neutral | N | 0.505176181 | None | None | I |
H/R | 0.346 | ambiguous | 0.3823 | ambiguous | -0.073 | Destabilizing | 0.984 | D | 0.52 | neutral | N | 0.50411833 | None | None | I |
H/S | 0.4704 | ambiguous | 0.5448 | ambiguous | 0.564 | Stabilizing | 0.959 | D | 0.529 | neutral | None | None | None | None | I |
H/T | 0.5949 | likely_pathogenic | 0.6616 | pathogenic | 0.662 | Stabilizing | 0.988 | D | 0.579 | neutral | None | None | None | None | I |
H/V | 0.4081 | ambiguous | 0.4733 | ambiguous | 0.975 | Stabilizing | 0.976 | D | 0.587 | neutral | None | None | None | None | I |
H/W | 0.3985 | ambiguous | 0.4365 | ambiguous | 0.935 | Stabilizing | 0.997 | D | 0.639 | neutral | None | None | None | None | I |
H/Y | 0.0706 | likely_benign | 0.0811 | benign | 1.235 | Stabilizing | 0.026 | N | 0.373 | neutral | N | 0.502448275 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.