Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15735 | 47428;47429;47430 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
N2AB | 14094 | 42505;42506;42507 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
N2A | 13167 | 39724;39725;39726 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
N2B | 6670 | 20233;20234;20235 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
Novex-1 | 6795 | 20608;20609;20610 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
Novex-2 | 6862 | 20809;20810;20811 | chr2:178618255;178618254;178618253 | chr2:179482982;179482981;179482980 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs780694414 | -1.931 | 0.722 | N | 0.669 | 0.231 | 0.411401001288 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
R/G | rs780694414 | -1.931 | 0.722 | N | 0.669 | 0.231 | 0.411401001288 | gnomAD-4.0.0 | 1.59317E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.77701E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6926 | likely_pathogenic | 0.7246 | pathogenic | -1.583 | Destabilizing | 0.633 | D | 0.567 | neutral | None | None | None | None | I |
R/C | 0.3278 | likely_benign | 0.3032 | benign | -1.702 | Destabilizing | 0.996 | D | 0.749 | deleterious | None | None | None | None | I |
R/D | 0.9441 | likely_pathogenic | 0.958 | pathogenic | -0.641 | Destabilizing | 0.923 | D | 0.713 | prob.delet. | None | None | None | None | I |
R/E | 0.5566 | ambiguous | 0.5823 | pathogenic | -0.514 | Destabilizing | 0.633 | D | 0.487 | neutral | None | None | None | None | I |
R/F | 0.7836 | likely_pathogenic | 0.7673 | pathogenic | -1.45 | Destabilizing | 0.987 | D | 0.768 | deleterious | None | None | None | None | I |
R/G | 0.6698 | likely_pathogenic | 0.7245 | pathogenic | -1.874 | Destabilizing | 0.722 | D | 0.669 | neutral | N | 0.47655721 | None | None | I |
R/H | 0.2227 | likely_benign | 0.2439 | benign | -1.849 | Destabilizing | 0.961 | D | 0.589 | neutral | None | None | None | None | I |
R/I | 0.3933 | ambiguous | 0.3702 | ambiguous | -0.78 | Destabilizing | 0.949 | D | 0.778 | deleterious | N | 0.464257781 | None | None | I |
R/K | 0.1023 | likely_benign | 0.111 | benign | -1.604 | Destabilizing | 0.003 | N | 0.214 | neutral | N | 0.452873891 | None | None | I |
R/L | 0.472 | ambiguous | 0.477 | ambiguous | -0.78 | Destabilizing | 0.775 | D | 0.669 | neutral | None | None | None | None | I |
R/M | 0.4178 | ambiguous | 0.4277 | ambiguous | -1.008 | Destabilizing | 0.996 | D | 0.699 | prob.neutral | None | None | None | None | I |
R/N | 0.8591 | likely_pathogenic | 0.8768 | pathogenic | -1.047 | Destabilizing | 0.923 | D | 0.609 | neutral | None | None | None | None | I |
R/P | 0.9858 | likely_pathogenic | 0.9878 | pathogenic | -1.031 | Destabilizing | 0.961 | D | 0.786 | deleterious | None | None | None | None | I |
R/Q | 0.1305 | likely_benign | 0.1376 | benign | -1.277 | Destabilizing | 0.858 | D | 0.624 | neutral | None | None | None | None | I |
R/S | 0.7691 | likely_pathogenic | 0.8043 | pathogenic | -1.981 | Destabilizing | 0.565 | D | 0.626 | neutral | N | 0.483496696 | None | None | I |
R/T | 0.4176 | ambiguous | 0.4201 | ambiguous | -1.677 | Destabilizing | 0.722 | D | 0.676 | prob.neutral | N | 0.477258131 | None | None | I |
R/V | 0.4364 | ambiguous | 0.4315 | ambiguous | -1.031 | Destabilizing | 0.923 | D | 0.769 | deleterious | None | None | None | None | I |
R/W | 0.3916 | ambiguous | 0.422 | ambiguous | -0.972 | Destabilizing | 0.996 | D | 0.69 | prob.neutral | None | None | None | None | I |
R/Y | 0.6741 | likely_pathogenic | 0.6851 | pathogenic | -0.713 | Destabilizing | 0.987 | D | 0.773 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.