Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15908 | 47947;47948;47949 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
N2AB | 14267 | 43024;43025;43026 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
N2A | 13340 | 40243;40244;40245 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
N2B | 6843 | 20752;20753;20754 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
Novex-1 | 6968 | 21127;21128;21129 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
Novex-2 | 7035 | 21328;21329;21330 | chr2:178617363;178617362;178617361 | chr2:179482090;179482089;179482088 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs767724702 | -0.554 | 1.0 | D | 0.745 | 0.427 | 0.792423958598 | gnomAD-2.1.1 | 9.38E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 6.4E-05 | None | 0 | None | 0 | 1.02E-05 | 0 |
R/C | rs767724702 | -0.554 | 1.0 | D | 0.745 | 0.427 | 0.792423958598 | gnomAD-4.0.0 | 5.58773E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.26823E-06 | 0 | 0 |
R/H | rs72677237 | -1.517 | 1.0 | N | 0.805 | 0.368 | None | gnomAD-2.1.1 | 6.46738E-03 | None | None | None | None | I | None | 1.11329E-03 | 4.76737E-03 | None | 2.40035E-02 | 0 | None | 1.08364E-02 | None | 1.80596E-03 | 7.38292E-03 | 1.01587E-02 |
R/H | rs72677237 | -1.517 | 1.0 | N | 0.805 | 0.368 | None | gnomAD-3.1.2 | 5.39843E-03 | None | None | None | None | I | None | 1.44955E-03 | 4.39402E-03 | 0 | 2.74091E-02 | 0 | None | 1.88253E-03 | 2.8481E-02 | 7.52755E-03 | 8.07119E-03 | 9.10834E-03 |
R/H | rs72677237 | -1.517 | 1.0 | N | 0.805 | 0.368 | None | 1000 genomes | 2.99521E-03 | None | None | None | None | I | None | 8E-04 | 8.6E-03 | None | None | 0 | 6E-03 | None | None | None | 2E-03 | None |
R/H | rs72677237 | -1.517 | 1.0 | N | 0.805 | 0.368 | None | gnomAD-4.0.0 | 6.40655E-03 | None | None | None | None | I | None | 1.49803E-03 | 4.87999E-03 | None | 2.6441E-02 | 0 | None | 2.57781E-03 | 1.52327E-02 | 6.27491E-03 | 1.08391E-02 | 8.45383E-03 |
R/P | None | None | 1.0 | N | 0.746 | 0.38 | 0.630571860293 | gnomAD-4.0.0 | 6.98924E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 1.76056E-04 | 0 | 0 | 0 |
R/S | rs767724702 | -0.967 | 1.0 | N | 0.734 | 0.356 | 0.548188646194 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | I | None | 1.14863E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/S | rs767724702 | -0.967 | 1.0 | N | 0.734 | 0.356 | 0.548188646194 | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | I | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/S | rs767724702 | -0.967 | 1.0 | N | 0.734 | 0.356 | 0.548188646194 | gnomAD-4.0.0 | 5.68354E-06 | None | None | None | None | I | None | 1.36307E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 6.846E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7843 | likely_pathogenic | 0.7961 | pathogenic | -0.858 | Destabilizing | 0.999 | D | 0.641 | neutral | None | None | None | None | I |
R/C | 0.3762 | ambiguous | 0.3661 | ambiguous | -0.822 | Destabilizing | 1.0 | D | 0.745 | deleterious | D | 0.614117672 | None | None | I |
R/D | 0.9573 | likely_pathogenic | 0.9606 | pathogenic | -0.091 | Destabilizing | 1.0 | D | 0.757 | deleterious | None | None | None | None | I |
R/E | 0.8013 | likely_pathogenic | 0.7967 | pathogenic | 0.033 | Stabilizing | 0.999 | D | 0.708 | prob.delet. | None | None | None | None | I |
R/F | 0.8783 | likely_pathogenic | 0.8894 | pathogenic | -0.695 | Destabilizing | 1.0 | D | 0.738 | prob.delet. | None | None | None | None | I |
R/G | 0.7962 | likely_pathogenic | 0.8064 | pathogenic | -1.171 | Destabilizing | 1.0 | D | 0.665 | neutral | N | 0.477129663 | None | None | I |
R/H | 0.2943 | likely_benign | 0.2752 | benign | -1.419 | Destabilizing | 1.0 | D | 0.805 | deleterious | N | 0.512279679 | None | None | I |
R/I | 0.5661 | likely_pathogenic | 0.541 | ambiguous | -0.018 | Destabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | I |
R/K | 0.2281 | likely_benign | 0.2582 | benign | -0.906 | Destabilizing | 0.998 | D | 0.556 | neutral | None | None | None | None | I |
R/L | 0.5082 | ambiguous | 0.504 | ambiguous | -0.018 | Destabilizing | 1.0 | D | 0.665 | neutral | N | 0.473830233 | None | None | I |
R/M | 0.6929 | likely_pathogenic | 0.698 | pathogenic | -0.334 | Destabilizing | 1.0 | D | 0.773 | deleterious | None | None | None | None | I |
R/N | 0.904 | likely_pathogenic | 0.9095 | pathogenic | -0.354 | Destabilizing | 1.0 | D | 0.783 | deleterious | None | None | None | None | I |
R/P | 0.6583 | likely_pathogenic | 0.634 | pathogenic | -0.278 | Destabilizing | 1.0 | D | 0.746 | deleterious | N | 0.4803224 | None | None | I |
R/Q | 0.2461 | likely_benign | 0.2466 | benign | -0.525 | Destabilizing | 1.0 | D | 0.772 | deleterious | None | None | None | None | I |
R/S | 0.874 | likely_pathogenic | 0.8854 | pathogenic | -1.142 | Destabilizing | 1.0 | D | 0.734 | prob.delet. | N | 0.477214922 | None | None | I |
R/T | 0.6571 | likely_pathogenic | 0.6881 | pathogenic | -0.836 | Destabilizing | 1.0 | D | 0.728 | prob.delet. | None | None | None | None | I |
R/V | 0.6767 | likely_pathogenic | 0.6752 | pathogenic | -0.278 | Destabilizing | 1.0 | D | 0.757 | deleterious | None | None | None | None | I |
R/W | 0.4734 | ambiguous | 0.4883 | ambiguous | -0.333 | Destabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | I |
R/Y | 0.7543 | likely_pathogenic | 0.7662 | pathogenic | -0.045 | Destabilizing | 1.0 | D | 0.754 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.