Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1615 | 5068;5069;5070 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
N2AB | 1615 | 5068;5069;5070 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
N2A | 1615 | 5068;5069;5070 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
N2B | 1569 | 4930;4931;4932 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
Novex-1 | 1569 | 4930;4931;4932 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
Novex-2 | 1569 | 4930;4931;4932 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
Novex-3 | 1615 | 5068;5069;5070 | chr2:178777021;178777020;178777019 | chr2:179641748;179641747;179641746 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs777977684 | -1.652 | 0.121 | D | 0.423 | 0.367 | None | gnomAD-2.1.1 | 4E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.85E-06 | 0 |
L/F | rs777977684 | -1.652 | 0.121 | D | 0.423 | 0.367 | None | gnomAD-4.0.0 | 6.1572E-06 | None | None | None | None | N | None | 2.98775E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 7.19453E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9699 | likely_pathogenic | 0.9523 | pathogenic | -2.698 | Highly Destabilizing | 0.992 | D | 0.757 | deleterious | None | None | None | None | N |
L/C | 0.9343 | likely_pathogenic | 0.9041 | pathogenic | -2.062 | Highly Destabilizing | 1.0 | D | 0.752 | deleterious | None | None | None | None | N |
L/D | 0.9999 | likely_pathogenic | 0.9998 | pathogenic | -3.633 | Highly Destabilizing | 0.999 | D | 0.873 | deleterious | None | None | None | None | N |
L/E | 0.9985 | likely_pathogenic | 0.9975 | pathogenic | -3.333 | Highly Destabilizing | 0.999 | D | 0.869 | deleterious | None | None | None | None | N |
L/F | 0.4732 | ambiguous | 0.4072 | ambiguous | -1.722 | Destabilizing | 0.121 | N | 0.423 | neutral | D | 0.572531298 | None | None | N |
L/G | 0.9959 | likely_pathogenic | 0.9933 | pathogenic | -3.255 | Highly Destabilizing | 0.999 | D | 0.857 | deleterious | None | None | None | None | N |
L/H | 0.9954 | likely_pathogenic | 0.9925 | pathogenic | -2.92 | Highly Destabilizing | 1.0 | D | 0.873 | deleterious | D | 0.717924593 | None | None | N |
L/I | 0.2759 | likely_benign | 0.2229 | benign | -1.018 | Destabilizing | 0.978 | D | 0.622 | neutral | D | 0.631228988 | None | None | N |
L/K | 0.9971 | likely_pathogenic | 0.9954 | pathogenic | -2.266 | Highly Destabilizing | 0.999 | D | 0.845 | deleterious | None | None | None | None | N |
L/M | 0.347 | ambiguous | 0.2907 | benign | -1.169 | Destabilizing | 0.999 | D | 0.633 | neutral | None | None | None | None | N |
L/N | 0.999 | likely_pathogenic | 0.9984 | pathogenic | -2.963 | Highly Destabilizing | 0.999 | D | 0.875 | deleterious | None | None | None | None | N |
L/P | 0.9989 | likely_pathogenic | 0.9982 | pathogenic | -1.571 | Destabilizing | 0.999 | D | 0.883 | deleterious | D | 0.775995996 | None | None | N |
L/Q | 0.9936 | likely_pathogenic | 0.9884 | pathogenic | -2.663 | Highly Destabilizing | 0.999 | D | 0.864 | deleterious | None | None | None | None | N |
L/R | 0.9925 | likely_pathogenic | 0.988 | pathogenic | -2.264 | Highly Destabilizing | 0.999 | D | 0.857 | deleterious | D | 0.775995996 | None | None | N |
L/S | 0.9974 | likely_pathogenic | 0.9953 | pathogenic | -3.463 | Highly Destabilizing | 0.999 | D | 0.824 | deleterious | None | None | None | None | N |
L/T | 0.9892 | likely_pathogenic | 0.9815 | pathogenic | -3.008 | Highly Destabilizing | 0.999 | D | 0.779 | deleterious | None | None | None | None | N |
L/V | 0.2977 | likely_benign | 0.2404 | benign | -1.571 | Destabilizing | 0.978 | D | 0.656 | neutral | D | 0.642952088 | None | None | N |
L/W | 0.9607 | likely_pathogenic | 0.9365 | pathogenic | -2.122 | Highly Destabilizing | 1.0 | D | 0.85 | deleterious | None | None | None | None | N |
L/Y | 0.9748 | likely_pathogenic | 0.9619 | pathogenic | -1.899 | Destabilizing | 0.99 | D | 0.773 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.