Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16186 | 48781;48782;48783 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
N2AB | 14545 | 43858;43859;43860 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
N2A | 13618 | 41077;41078;41079 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
N2B | 7121 | 21586;21587;21588 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
Novex-1 | 7246 | 21961;21962;21963 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
Novex-2 | 7313 | 22162;22163;22164 | chr2:178615389;178615388;178615387 | chr2:179480116;179480115;179480114 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs377563403 | -0.044 | 1.0 | N | 0.445 | 0.396 | 0.556145022309 | gnomAD-2.1.1 | 8.46E-05 | None | None | None | None | I | None | 1.2945E-04 | 2.9E-05 | None | 0 | 0 | None | 5.23115E-04 | None | 0 | 1.78E-05 | 0 |
R/C | rs377563403 | -0.044 | 1.0 | N | 0.445 | 0.396 | 0.556145022309 | gnomAD-3.1.2 | 3.95E-05 | None | None | None | None | I | None | 9.67E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 4.14766E-04 | 0 |
R/C | rs377563403 | -0.044 | 1.0 | N | 0.445 | 0.396 | 0.556145022309 | gnomAD-4.0.0 | 3.59688E-05 | None | None | None | None | I | None | 6.67735E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.48151E-06 | 4.72413E-04 | 0 |
R/H | rs769784536 | -0.687 | 0.999 | N | 0.437 | 0.288 | 0.233150807113 | gnomAD-2.1.1 | 2.01E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 1.78E-05 | 1.66279E-04 |
R/H | rs769784536 | -0.687 | 0.999 | N | 0.437 | 0.288 | 0.233150807113 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | I | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 9.42E-05 | 0 | 0 | 4.1511E-04 | 0 |
R/H | rs769784536 | -0.687 | 0.999 | N | 0.437 | 0.288 | 0.233150807113 | gnomAD-4.0.0 | 2.17058E-05 | None | None | None | None | I | None | 1.33715E-05 | 0 | None | 0 | 0 | None | 1.56206E-05 | 0 | 2.03551E-05 | 8.78908E-05 | 1.60272E-05 |
R/L | rs769784536 | 0.531 | 0.983 | N | 0.56 | 0.276 | 0.515317749148 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
R/L | rs769784536 | 0.531 | 0.983 | N | 0.56 | 0.276 | 0.515317749148 | gnomAD-3.1.2 | 1.98E-05 | None | None | None | None | I | None | 0 | 1.97006E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | rs769784536 | 0.531 | 0.983 | N | 0.56 | 0.276 | 0.515317749148 | gnomAD-4.0.0 | 6.20167E-06 | None | None | None | None | I | None | 0 | 5.00734E-05 | None | 0 | 2.23484E-05 | None | 0 | 0 | 2.54439E-06 | 0 | 4.80815E-05 |
R/S | rs377563403 | None | 0.533 | N | 0.22 | 0.136 | None | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | I | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/S | rs377563403 | None | 0.533 | N | 0.22 | 0.136 | None | gnomAD-4.0.0 | 1.86059E-06 | None | None | None | None | I | None | 2.6753E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.48145E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3735 | ambiguous | 0.278 | benign | 0.099 | Stabilizing | 0.759 | D | 0.442 | neutral | None | None | None | None | I |
R/C | 0.2486 | likely_benign | 0.1942 | benign | -0.152 | Destabilizing | 1.0 | D | 0.445 | neutral | N | 0.476369479 | None | None | I |
R/D | 0.741 | likely_pathogenic | 0.6231 | pathogenic | -0.246 | Destabilizing | 0.939 | D | 0.557 | neutral | None | None | None | None | I |
R/E | 0.4922 | ambiguous | 0.3903 | ambiguous | -0.192 | Destabilizing | 0.939 | D | 0.391 | neutral | None | None | None | None | I |
R/F | 0.5992 | likely_pathogenic | 0.501 | ambiguous | -0.189 | Destabilizing | 0.997 | D | 0.475 | neutral | None | None | None | None | I |
R/G | 0.3334 | likely_benign | 0.239 | benign | -0.062 | Destabilizing | 0.037 | N | 0.211 | neutral | N | 0.443055437 | None | None | I |
R/H | 0.1344 | likely_benign | 0.1133 | benign | -0.624 | Destabilizing | 0.999 | D | 0.437 | neutral | N | 0.478736212 | None | None | I |
R/I | 0.3262 | likely_benign | 0.2563 | benign | 0.48 | Stabilizing | 0.991 | D | 0.5 | neutral | None | None | None | None | I |
R/K | 0.1043 | likely_benign | 0.1002 | benign | -0.064 | Destabilizing | 0.863 | D | 0.436 | neutral | None | None | None | None | I |
R/L | 0.3006 | likely_benign | 0.2313 | benign | 0.48 | Stabilizing | 0.983 | D | 0.56 | neutral | N | 0.477853043 | None | None | I |
R/M | 0.3652 | ambiguous | 0.2866 | benign | -0.01 | Destabilizing | 0.997 | D | 0.461 | neutral | None | None | None | None | I |
R/N | 0.6363 | likely_pathogenic | 0.5228 | ambiguous | 0.036 | Stabilizing | 0.939 | D | 0.419 | neutral | None | None | None | None | I |
R/P | 0.3062 | likely_benign | 0.2253 | benign | 0.372 | Stabilizing | 0.084 | N | 0.265 | neutral | N | 0.312187648 | None | None | I |
R/Q | 0.1509 | likely_benign | 0.1239 | benign | 0.004 | Stabilizing | 0.969 | D | 0.421 | neutral | None | None | None | None | I |
R/S | 0.5552 | ambiguous | 0.4322 | ambiguous | -0.153 | Destabilizing | 0.533 | D | 0.22 | neutral | N | 0.463796662 | None | None | I |
R/T | 0.3337 | likely_benign | 0.2471 | benign | 0.018 | Stabilizing | 0.884 | D | 0.484 | neutral | None | None | None | None | I |
R/V | 0.3488 | ambiguous | 0.2833 | benign | 0.372 | Stabilizing | 0.969 | D | 0.501 | neutral | None | None | None | None | I |
R/W | 0.2673 | likely_benign | 0.2088 | benign | -0.362 | Destabilizing | 0.999 | D | 0.479 | neutral | None | None | None | None | I |
R/Y | 0.4645 | ambiguous | 0.3907 | ambiguous | 0.057 | Stabilizing | 0.997 | D | 0.488 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.