Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16656 | 50191;50192;50193 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
N2AB | 15015 | 45268;45269;45270 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
N2A | 14088 | 42487;42488;42489 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
N2B | 7591 | 22996;22997;22998 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
Novex-1 | 7716 | 23371;23372;23373 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
Novex-2 | 7783 | 23572;23573;23574 | chr2:178612559;178612558;178612557 | chr2:179477286;179477285;179477284 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs1030093239 | -0.258 | 0.252 | D | 0.517 | 0.268 | 0.514866526686 | gnomAD-2.1.1 | 7.35E-06 | None | None | None | None | N | None | 4.21E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.13E-06 | 0 |
R/C | rs1030093239 | -0.258 | 0.252 | D | 0.517 | 0.268 | 0.514866526686 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 2.0816E-04 | 0 |
R/C | rs1030093239 | -0.258 | 0.252 | D | 0.517 | 0.268 | 0.514866526686 | gnomAD-4.0.0 | 1.11796E-05 | None | None | None | None | N | None | 1.33976E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.01805E-05 | 4.42165E-05 | 1.60539E-05 |
R/H | rs373799076 | -1.201 | 1.0 | D | 0.647 | 0.382 | None | gnomAD-2.1.1 | 3.32E-05 | None | None | None | None | N | None | 0 | 2.95E-05 | None | 0 | 2.85812E-04 | None | 0 | None | 0 | 1.86E-05 | 0 |
R/H | rs373799076 | -1.201 | 1.0 | D | 0.647 | 0.382 | None | gnomAD-3.1.2 | 6.61E-06 | None | None | None | None | N | None | 2.43E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs373799076 | -1.201 | 1.0 | D | 0.647 | 0.382 | None | gnomAD-4.0.0 | 3.04448E-05 | None | None | None | None | N | None | 2.68039E-05 | 3.35762E-05 | None | 0 | 4.49762E-05 | None | 0 | 0 | 3.47887E-05 | 1.10735E-05 | 1.60498E-05 |
R/L | rs373799076 | None | 0.913 | N | 0.707 | 0.306 | 0.552656131934 | gnomAD-4.0.0 | 6.17284E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.10304E-06 | 0 | 0 |
R/S | rs1030093239 | -0.465 | 0.954 | N | 0.719 | 0.332 | 0.394536629495 | gnomAD-2.1.1 | 8.3E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.71E-05 | None | 0 | 0 | 0 |
R/S | rs1030093239 | -0.465 | 0.954 | N | 0.719 | 0.332 | 0.394536629495 | gnomAD-4.0.0 | 5.48543E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80046E-06 | 5.83703E-05 | 1.66091E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7238 | likely_pathogenic | 0.8312 | pathogenic | -0.896 | Destabilizing | 0.845 | D | 0.687 | prob.neutral | None | None | None | None | N |
R/C | 0.4269 | ambiguous | 0.5644 | pathogenic | -0.693 | Destabilizing | 0.252 | N | 0.517 | neutral | D | 0.576679243 | None | None | N |
R/D | 0.9233 | likely_pathogenic | 0.9586 | pathogenic | -0.207 | Destabilizing | 0.996 | D | 0.786 | deleterious | None | None | None | None | N |
R/E | 0.6306 | likely_pathogenic | 0.7742 | pathogenic | -0.016 | Destabilizing | 0.985 | D | 0.659 | neutral | None | None | None | None | N |
R/F | 0.8728 | likely_pathogenic | 0.9457 | pathogenic | -0.302 | Destabilizing | 0.987 | D | 0.779 | deleterious | None | None | None | None | N |
R/G | 0.661 | likely_pathogenic | 0.7686 | pathogenic | -1.277 | Destabilizing | 0.977 | D | 0.717 | prob.delet. | N | 0.477832869 | None | None | N |
R/H | 0.2806 | likely_benign | 0.3524 | ambiguous | -1.601 | Destabilizing | 1.0 | D | 0.647 | neutral | D | 0.562624057 | None | None | N |
R/I | 0.5627 | ambiguous | 0.7917 | pathogenic | 0.164 | Stabilizing | 0.975 | D | 0.78 | deleterious | None | None | None | None | N |
R/K | 0.2116 | likely_benign | 0.2167 | benign | -0.687 | Destabilizing | 0.957 | D | 0.577 | neutral | None | None | None | None | N |
R/L | 0.5086 | ambiguous | 0.6977 | pathogenic | 0.164 | Stabilizing | 0.913 | D | 0.707 | prob.neutral | N | 0.483117192 | None | None | N |
R/M | 0.6713 | likely_pathogenic | 0.8238 | pathogenic | -0.325 | Destabilizing | 0.999 | D | 0.706 | prob.neutral | None | None | None | None | N |
R/N | 0.8637 | likely_pathogenic | 0.9178 | pathogenic | -0.456 | Destabilizing | 0.996 | D | 0.652 | neutral | None | None | None | None | N |
R/P | 0.9438 | likely_pathogenic | 0.964 | pathogenic | -0.17 | Destabilizing | 0.998 | D | 0.787 | deleterious | D | 0.551071485 | None | None | N |
R/Q | 0.196 | likely_benign | 0.2503 | benign | -0.394 | Destabilizing | 0.996 | D | 0.679 | prob.neutral | None | None | None | None | N |
R/S | 0.7893 | likely_pathogenic | 0.8815 | pathogenic | -1.149 | Destabilizing | 0.954 | D | 0.719 | prob.delet. | N | 0.479378498 | None | None | N |
R/T | 0.5914 | likely_pathogenic | 0.7666 | pathogenic | -0.743 | Destabilizing | 0.916 | D | 0.72 | prob.delet. | None | None | None | None | N |
R/V | 0.628 | likely_pathogenic | 0.7996 | pathogenic | -0.17 | Destabilizing | 0.975 | D | 0.729 | prob.delet. | None | None | None | None | N |
R/W | 0.5775 | likely_pathogenic | 0.7659 | pathogenic | 0.056 | Stabilizing | 0.999 | D | 0.78 | deleterious | None | None | None | None | N |
R/Y | 0.7752 | likely_pathogenic | 0.8745 | pathogenic | 0.278 | Stabilizing | 0.996 | D | 0.792 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.