Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16905 | 50938;50939;50940 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
N2AB | 15264 | 46015;46016;46017 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
N2A | 14337 | 43234;43235;43236 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
N2B | 7840 | 23743;23744;23745 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
Novex-1 | 7965 | 24118;24119;24120 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
Novex-2 | 8032 | 24319;24320;24321 | chr2:178611516;178611515;178611514 | chr2:179476243;179476242;179476241 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs267599049 | -0.287 | 1.0 | D | 0.776 | 0.412 | 0.642361509819 | gnomAD-2.1.1 | 5.66E-05 | None | None | None | None | I | None | 6.47E-05 | 0 | None | 0 | 5.6E-05 | None | 2.61523E-04 | None | 0 | 3.59E-05 | 0 |
R/C | rs267599049 | -0.287 | 1.0 | D | 0.776 | 0.412 | 0.642361509819 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs267599049 | -0.287 | 1.0 | D | 0.776 | 0.412 | 0.642361509819 | gnomAD-4.0.0 | 1.86013E-05 | None | None | None | None | I | None | 1.33697E-05 | 0 | None | 0 | 1.11792E-04 | None | 0 | 0 | 5.9358E-06 | 1.64719E-04 | 3.20441E-05 |
R/H | rs191539637 | -0.617 | 1.0 | N | 0.754 | 0.386 | None | gnomAD-2.1.1 | 4.70117E-04 | None | None | None | None | I | None | 2.06902E-04 | 5.66E-05 | None | 2.42483E-03 | 3.09725E-04 | None | 3.27E-05 | None | 9.19559E-04 | 4.96885E-04 | 8.45309E-04 |
R/H | rs191539637 | -0.617 | 1.0 | N | 0.754 | 0.386 | None | gnomAD-3.1.2 | 5.26794E-04 | None | None | None | None | I | None | 9.66E-05 | 6.56E-05 | 0 | 2.88184E-03 | 3.9032E-04 | None | 1.69907E-03 | 0 | 6.62681E-04 | 0 | 0 |
R/H | rs191539637 | -0.617 | 1.0 | N | 0.754 | 0.386 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | I | None | 0 | 1.4E-03 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
R/H | rs191539637 | -0.617 | 1.0 | N | 0.754 | 0.386 | None | gnomAD-4.0.0 | 3.66426E-04 | None | None | None | None | I | None | 1.20122E-04 | 6.672E-05 | None | 3.07578E-03 | 1.34192E-04 | None | 1.21913E-03 | 0 | 3.26476E-04 | 1.09818E-05 | 2.72296E-04 |
R/P | rs191539637 | -0.225 | 1.0 | N | 0.691 | 0.387 | 0.364730456448 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/P | rs191539637 | -0.225 | 1.0 | N | 0.691 | 0.387 | 0.364730456448 | gnomAD-4.0.0 | 1.36902E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.15958E-05 | 1.65782E-05 |
R/S | rs267599049 | 0.111 | 1.0 | N | 0.672 | 0.421 | 0.31501682445 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7337 | likely_pathogenic | 0.7886 | pathogenic | 0.044 | Stabilizing | 0.999 | D | 0.611 | neutral | None | None | None | None | I |
R/C | 0.3671 | ambiguous | 0.4072 | ambiguous | -0.14 | Destabilizing | 1.0 | D | 0.776 | deleterious | D | 0.550888858 | None | None | I |
R/D | 0.8962 | likely_pathogenic | 0.9195 | pathogenic | -0.26 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | I |
R/E | 0.7166 | likely_pathogenic | 0.7464 | pathogenic | -0.217 | Destabilizing | 0.999 | D | 0.635 | neutral | None | None | None | None | I |
R/F | 0.804 | likely_pathogenic | 0.836 | pathogenic | -0.257 | Destabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | I |
R/G | 0.6123 | likely_pathogenic | 0.6733 | pathogenic | -0.107 | Destabilizing | 1.0 | D | 0.616 | neutral | N | 0.440274827 | None | None | I |
R/H | 0.2049 | likely_benign | 0.2204 | benign | -0.635 | Destabilizing | 1.0 | D | 0.754 | deleterious | N | 0.48132334 | None | None | I |
R/I | 0.5466 | ambiguous | 0.6151 | pathogenic | 0.397 | Stabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | I |
R/K | 0.1908 | likely_benign | 0.1872 | benign | -0.094 | Destabilizing | 0.998 | D | 0.53 | neutral | None | None | None | None | I |
R/L | 0.487 | ambiguous | 0.5524 | ambiguous | 0.397 | Stabilizing | 1.0 | D | 0.616 | neutral | N | 0.475267477 | None | None | I |
R/M | 0.6028 | likely_pathogenic | 0.6665 | pathogenic | -0.008 | Destabilizing | 1.0 | D | 0.728 | prob.delet. | None | None | None | None | I |
R/N | 0.8329 | likely_pathogenic | 0.8648 | pathogenic | 0.062 | Stabilizing | 1.0 | D | 0.716 | prob.delet. | None | None | None | None | I |
R/P | 0.9343 | likely_pathogenic | 0.9365 | pathogenic | 0.298 | Stabilizing | 1.0 | D | 0.691 | prob.neutral | N | 0.470339484 | None | None | I |
R/Q | 0.2032 | likely_benign | 0.2217 | benign | -0.004 | Destabilizing | 1.0 | D | 0.708 | prob.delet. | None | None | None | None | I |
R/S | 0.7866 | likely_pathogenic | 0.8289 | pathogenic | -0.148 | Destabilizing | 1.0 | D | 0.672 | neutral | N | 0.460085859 | None | None | I |
R/T | 0.5906 | likely_pathogenic | 0.6557 | pathogenic | 0.005 | Stabilizing | 1.0 | D | 0.671 | neutral | None | None | None | None | I |
R/V | 0.6281 | likely_pathogenic | 0.6807 | pathogenic | 0.298 | Stabilizing | 1.0 | D | 0.715 | prob.delet. | None | None | None | None | I |
R/W | 0.4137 | ambiguous | 0.4724 | ambiguous | -0.415 | Destabilizing | 1.0 | D | 0.789 | deleterious | None | None | None | None | I |
R/Y | 0.6665 | likely_pathogenic | 0.7138 | pathogenic | -0.006 | Destabilizing | 1.0 | D | 0.726 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.