Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16938 | 51037;51038;51039 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
N2AB | 15297 | 46114;46115;46116 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
N2A | 14370 | 43333;43334;43335 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
N2B | 7873 | 23842;23843;23844 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
Novex-1 | 7998 | 24217;24218;24219 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
Novex-2 | 8065 | 24418;24419;24420 | chr2:178611417;178611416;178611415 | chr2:179476144;179476143;179476142 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/D | rs779893350 | -0.342 | 0.006 | N | 0.205 | 0.046 | 0.0611884634855 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.95E-06 | 0 |
E/D | rs779893350 | -0.342 | 0.006 | N | 0.205 | 0.046 | 0.0611884634855 | gnomAD-4.0.0 | 1.59317E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86139E-06 | 0 | 0 |
E/K | rs72677250 | 0.315 | 0.963 | N | 0.592 | 0.244 | 0.355865052028 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
E/K | rs72677250 | 0.315 | 0.963 | N | 0.592 | 0.244 | 0.355865052028 | gnomAD-4.0.0 | 1.23223E-05 | None | None | None | None | I | None | 0 | 2.23794E-05 | None | 3.83083E-05 | 0 | None | 0 | 0 | 1.16973E-05 | 3.47891E-05 | 0 |
E/Q | rs72677250 | -0.084 | 0.976 | N | 0.655 | 0.248 | 0.280987212366 | gnomAD-2.1.1 | 2.87E-05 | None | None | None | None | I | None | 0 | 2.83E-05 | None | 0 | 0 | None | 0 | None | 0 | 5.5E-05 | 0 |
E/Q | rs72677250 | -0.084 | 0.976 | N | 0.655 | 0.248 | 0.280987212366 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | I | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 4.42E-05 | 0 | 0 |
E/Q | rs72677250 | -0.084 | 0.976 | N | 0.655 | 0.248 | 0.280987212366 | gnomAD-4.0.0 | 1.61216E-05 | None | None | None | None | I | None | 0 | 1.66828E-05 | None | 0 | 0 | None | 0 | 0 | 2.1199E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.1817 | likely_benign | 0.3668 | ambiguous | -0.644 | Destabilizing | 0.822 | D | 0.639 | neutral | N | 0.481693036 | None | None | I |
E/C | 0.8522 | likely_pathogenic | 0.964 | pathogenic | -0.248 | Destabilizing | 0.998 | D | 0.768 | deleterious | None | None | None | None | I |
E/D | 0.0675 | likely_benign | 0.1203 | benign | -0.582 | Destabilizing | 0.006 | N | 0.205 | neutral | N | 0.459938237 | None | None | I |
E/F | 0.768 | likely_pathogenic | 0.9299 | pathogenic | -0.411 | Destabilizing | 0.998 | D | 0.725 | prob.delet. | None | None | None | None | I |
E/G | 0.2237 | likely_benign | 0.4698 | ambiguous | -0.873 | Destabilizing | 0.822 | D | 0.631 | neutral | D | 0.546621772 | None | None | I |
E/H | 0.5321 | ambiguous | 0.8121 | pathogenic | -0.229 | Destabilizing | 0.998 | D | 0.606 | neutral | None | None | None | None | I |
E/I | 0.4073 | ambiguous | 0.7113 | pathogenic | -0.061 | Destabilizing | 0.978 | D | 0.745 | deleterious | None | None | None | None | I |
E/K | 0.234 | likely_benign | 0.4373 | ambiguous | None | Stabilizing | 0.963 | D | 0.592 | neutral | N | 0.482816403 | None | None | I |
E/L | 0.3714 | ambiguous | 0.6878 | pathogenic | -0.061 | Destabilizing | 0.978 | D | 0.733 | prob.delet. | None | None | None | None | I |
E/M | 0.5198 | ambiguous | 0.7646 | pathogenic | 0.11 | Stabilizing | 0.998 | D | 0.721 | prob.delet. | None | None | None | None | I |
E/N | 0.2262 | likely_benign | 0.503 | ambiguous | -0.373 | Destabilizing | 0.915 | D | 0.649 | neutral | None | None | None | None | I |
E/P | 0.3774 | ambiguous | 0.7247 | pathogenic | -0.235 | Destabilizing | 0.978 | D | 0.703 | prob.neutral | None | None | None | None | I |
E/Q | 0.1931 | likely_benign | 0.3613 | ambiguous | -0.331 | Destabilizing | 0.976 | D | 0.655 | neutral | N | 0.482818545 | None | None | I |
E/R | 0.3848 | ambiguous | 0.6434 | pathogenic | 0.29 | Stabilizing | 0.978 | D | 0.654 | neutral | None | None | None | None | I |
E/S | 0.2075 | likely_benign | 0.4381 | ambiguous | -0.548 | Destabilizing | 0.86 | D | 0.593 | neutral | None | None | None | None | I |
E/T | 0.2916 | likely_benign | 0.5653 | pathogenic | -0.363 | Destabilizing | 0.956 | D | 0.661 | neutral | None | None | None | None | I |
E/V | 0.2563 | likely_benign | 0.4912 | ambiguous | -0.235 | Destabilizing | 0.971 | D | 0.716 | prob.delet. | N | 0.481864881 | None | None | I |
E/W | 0.9163 | likely_pathogenic | 0.9809 | pathogenic | -0.199 | Destabilizing | 0.998 | D | 0.756 | deleterious | None | None | None | None | I |
E/Y | 0.6247 | likely_pathogenic | 0.8684 | pathogenic | -0.165 | Destabilizing | 0.998 | D | 0.726 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.