Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17000 | 51223;51224;51225 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
N2AB | 15359 | 46300;46301;46302 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
N2A | 14432 | 43519;43520;43521 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
N2B | 7935 | 24028;24029;24030 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
Novex-1 | 8060 | 24403;24404;24405 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
Novex-2 | 8127 | 24604;24605;24606 | chr2:178611131;178611130;178611129 | chr2:179475858;179475857;179475856 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs1488377419 | None | 0.81 | D | 0.295 | 0.267 | 0.404453528171 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/G | rs1488377419 | None | 0.81 | D | 0.295 | 0.267 | 0.404453528171 | gnomAD-4.0.0 | 6.5799E-06 | None | None | None | None | N | None | 2.41278E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/K | rs767481574 | -0.399 | 0.897 | N | 0.271 | 0.195 | None | gnomAD-2.1.1 | 2.01E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.81025E-04 | None | 0 | None | 0 | 0 | 0 |
R/K | rs767481574 | -0.399 | 0.897 | N | 0.271 | 0.195 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.95236E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/K | rs767481574 | -0.399 | 0.897 | N | 0.271 | 0.195 | None | gnomAD-4.0.0 | 5.14654E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.83593E-03 | None | 0 | 0 | 8.48001E-07 | 0 | 0 |
R/S | None | None | 0.681 | N | 0.289 | 0.175 | 0.231231049324 | gnomAD-4.0.0 | 1.5932E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86202E-06 | 0 | 0 |
R/T | rs767481574 | -0.499 | 0.81 | D | 0.307 | 0.451 | 0.453307948783 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
R/T | rs767481574 | -0.499 | 0.81 | D | 0.307 | 0.451 | 0.453307948783 | gnomAD-4.0.0 | 2.73829E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.59936E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7017 | likely_pathogenic | 0.7704 | pathogenic | -0.27 | Destabilizing | 0.025 | N | 0.133 | neutral | None | None | None | None | N |
R/C | 0.3026 | likely_benign | 0.3653 | ambiguous | -0.32 | Destabilizing | 0.999 | D | 0.435 | neutral | None | None | None | None | N |
R/D | 0.7415 | likely_pathogenic | 0.8034 | pathogenic | 0.151 | Stabilizing | 0.965 | D | 0.441 | neutral | None | None | None | None | N |
R/E | 0.5735 | likely_pathogenic | 0.6627 | pathogenic | 0.266 | Stabilizing | 0.965 | D | 0.231 | neutral | None | None | None | None | N |
R/F | 0.7616 | likely_pathogenic | 0.822 | pathogenic | -0.197 | Destabilizing | 0.98 | D | 0.476 | neutral | None | None | None | None | N |
R/G | 0.495 | ambiguous | 0.5802 | pathogenic | -0.556 | Destabilizing | 0.81 | D | 0.295 | neutral | D | 0.574514159 | None | None | N |
R/H | 0.159 | likely_benign | 0.1922 | benign | -0.966 | Destabilizing | 0.997 | D | 0.353 | neutral | None | None | None | None | N |
R/I | 0.3771 | ambiguous | 0.4894 | ambiguous | 0.477 | Stabilizing | 0.838 | D | 0.385 | neutral | D | 0.616468071 | None | None | N |
R/K | 0.2365 | likely_benign | 0.2038 | benign | -0.267 | Destabilizing | 0.897 | D | 0.271 | neutral | N | 0.499602707 | None | None | N |
R/L | 0.4434 | ambiguous | 0.5237 | ambiguous | 0.477 | Stabilizing | 0.739 | D | 0.292 | neutral | None | None | None | None | N |
R/M | 0.5284 | ambiguous | 0.6414 | pathogenic | -0.023 | Destabilizing | 0.553 | D | 0.162 | neutral | None | None | None | None | N |
R/N | 0.6816 | likely_pathogenic | 0.756 | pathogenic | 0.082 | Stabilizing | 0.988 | D | 0.352 | neutral | None | None | None | None | N |
R/P | 0.9024 | likely_pathogenic | 0.9143 | pathogenic | 0.25 | Stabilizing | 0.99 | D | 0.442 | neutral | None | None | None | None | N |
R/Q | 0.172 | likely_benign | 0.2173 | benign | -0.007 | Destabilizing | 0.965 | D | 0.374 | neutral | None | None | None | None | N |
R/S | 0.7145 | likely_pathogenic | 0.7871 | pathogenic | -0.494 | Destabilizing | 0.681 | D | 0.289 | neutral | N | 0.500732212 | None | None | N |
R/T | 0.4357 | ambiguous | 0.5445 | ambiguous | -0.206 | Destabilizing | 0.81 | D | 0.307 | neutral | D | 0.592675585 | None | None | N |
R/V | 0.5559 | ambiguous | 0.6538 | pathogenic | 0.25 | Stabilizing | 0.072 | N | 0.267 | neutral | None | None | None | None | N |
R/W | 0.3582 | ambiguous | 0.3994 | ambiguous | -0.031 | Destabilizing | 0.999 | D | 0.457 | neutral | None | None | None | None | N |
R/Y | 0.5303 | ambiguous | 0.6009 | pathogenic | 0.318 | Stabilizing | 0.997 | D | 0.416 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.