Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17325 | 52198;52199;52200 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
N2AB | 15684 | 47275;47276;47277 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
N2A | 14757 | 44494;44495;44496 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
N2B | 8260 | 25003;25004;25005 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
Novex-1 | 8385 | 25378;25379;25380 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
Novex-2 | 8452 | 25579;25580;25581 | chr2:178609337;178609336;178609335 | chr2:179474064;179474063;179474062 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/N | rs375717318 | -0.271 | 0.001 | N | 0.286 | 0.116 | None | gnomAD-2.1.1 | 4.06E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.96E-06 | 0 |
D/N | rs375717318 | -0.271 | 0.001 | N | 0.286 | 0.116 | None | gnomAD-4.0.0 | 2.05752E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.70173E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.3026 | likely_benign | 0.4187 | ambiguous | -0.151 | Destabilizing | 0.334 | N | 0.721 | prob.delet. | N | 0.489575339 | None | None | N |
D/C | 0.6037 | likely_pathogenic | 0.7049 | pathogenic | 0.444 | Stabilizing | 0.982 | D | 0.826 | deleterious | None | None | None | None | N |
D/E | 0.2515 | likely_benign | 0.3179 | benign | -0.274 | Destabilizing | 0.201 | N | 0.573 | neutral | N | 0.415154938 | None | None | N |
D/F | 0.6459 | likely_pathogenic | 0.7482 | pathogenic | -0.525 | Destabilizing | 0.982 | D | 0.838 | deleterious | None | None | None | None | N |
D/G | 0.4041 | ambiguous | 0.519 | ambiguous | -0.302 | Destabilizing | 0.201 | N | 0.626 | neutral | N | 0.487999258 | None | None | N |
D/H | 0.3083 | likely_benign | 0.403 | ambiguous | -0.625 | Destabilizing | 0.869 | D | 0.777 | deleterious | N | 0.506507661 | None | None | N |
D/I | 0.3869 | ambiguous | 0.476 | ambiguous | 0.182 | Stabilizing | 0.826 | D | 0.858 | deleterious | None | None | None | None | N |
D/K | 0.4944 | ambiguous | 0.5821 | pathogenic | 0.573 | Stabilizing | 0.539 | D | 0.727 | prob.delet. | None | None | None | None | N |
D/L | 0.4613 | ambiguous | 0.5823 | pathogenic | 0.182 | Stabilizing | 0.7 | D | 0.818 | deleterious | None | None | None | None | N |
D/M | 0.6734 | likely_pathogenic | 0.7533 | pathogenic | 0.52 | Stabilizing | 0.982 | D | 0.833 | deleterious | None | None | None | None | N |
D/N | 0.0982 | likely_benign | 0.129 | benign | 0.463 | Stabilizing | 0.001 | N | 0.286 | neutral | N | 0.493674437 | None | None | N |
D/P | 0.9159 | likely_pathogenic | 0.9443 | pathogenic | 0.092 | Stabilizing | 0.826 | D | 0.765 | deleterious | None | None | None | None | N |
D/Q | 0.4069 | ambiguous | 0.5142 | ambiguous | 0.439 | Stabilizing | 0.7 | D | 0.693 | prob.neutral | None | None | None | None | N |
D/R | 0.4668 | ambiguous | 0.5667 | pathogenic | 0.432 | Stabilizing | 0.7 | D | 0.773 | deleterious | None | None | None | None | N |
D/S | 0.1759 | likely_benign | 0.2356 | benign | 0.373 | Stabilizing | 0.25 | N | 0.555 | neutral | None | None | None | None | N |
D/T | 0.3233 | likely_benign | 0.4056 | ambiguous | 0.485 | Stabilizing | 0.539 | D | 0.707 | prob.neutral | None | None | None | None | N |
D/V | 0.2696 | likely_benign | 0.3407 | ambiguous | 0.092 | Stabilizing | 0.781 | D | 0.821 | deleterious | N | 0.497002743 | None | None | N |
D/W | 0.877 | likely_pathogenic | 0.9128 | pathogenic | -0.533 | Destabilizing | 0.982 | D | 0.785 | deleterious | None | None | None | None | N |
D/Y | 0.2621 | likely_benign | 0.3418 | ambiguous | -0.312 | Destabilizing | 0.976 | D | 0.841 | deleterious | D | 0.53171275 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.