Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1739 | 5440;5441;5442 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
N2AB | 1739 | 5440;5441;5442 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
N2A | 1739 | 5440;5441;5442 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
N2B | 1693 | 5302;5303;5304 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
Novex-1 | 1693 | 5302;5303;5304 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
Novex-2 | 1693 | 5302;5303;5304 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
Novex-3 | 1739 | 5440;5441;5442 | chr2:178776649;178776648;178776647 | chr2:179641376;179641375;179641374 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs762699336 | -1.537 | 1.0 | N | 0.657 | 0.371 | 0.637347744031 | gnomAD-2.1.1 | 7.97E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 8.83E-06 | 0 |
L/F | rs762699336 | -1.537 | 1.0 | N | 0.657 | 0.371 | 0.637347744031 | gnomAD-4.0.0 | 3.18136E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85652E-06 | 1.43271E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8261 | likely_pathogenic | 0.816 | pathogenic | -2.513 | Highly Destabilizing | 0.999 | D | 0.62 | neutral | None | None | None | None | N |
L/C | 0.8442 | likely_pathogenic | 0.8188 | pathogenic | -1.903 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
L/D | 0.9803 | likely_pathogenic | 0.9782 | pathogenic | -2.857 | Highly Destabilizing | 1.0 | D | 0.739 | prob.delet. | None | None | None | None | N |
L/E | 0.8504 | likely_pathogenic | 0.8371 | pathogenic | -2.688 | Highly Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | N |
L/F | 0.2823 | likely_benign | 0.285 | benign | -1.531 | Destabilizing | 1.0 | D | 0.657 | neutral | N | 0.463085242 | None | None | N |
L/G | 0.9428 | likely_pathogenic | 0.9404 | pathogenic | -2.992 | Highly Destabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | N |
L/H | 0.6283 | likely_pathogenic | 0.6215 | pathogenic | -2.376 | Highly Destabilizing | 1.0 | D | 0.736 | prob.delet. | D | 0.642317686 | None | None | N |
L/I | 0.2882 | likely_benign | 0.2784 | benign | -1.154 | Destabilizing | 0.999 | D | 0.463 | neutral | D | 0.599489176 | None | None | N |
L/K | 0.7775 | likely_pathogenic | 0.7654 | pathogenic | -1.888 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | None | None | None | None | N |
L/M | 0.2106 | likely_benign | 0.2082 | benign | -1.169 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
L/N | 0.8315 | likely_pathogenic | 0.829 | pathogenic | -2.108 | Highly Destabilizing | 1.0 | D | 0.742 | deleterious | None | None | None | None | N |
L/P | 0.9986 | likely_pathogenic | 0.9984 | pathogenic | -1.587 | Destabilizing | 1.0 | D | 0.741 | deleterious | D | 0.731496222 | None | None | N |
L/Q | 0.5002 | ambiguous | 0.4861 | ambiguous | -2.073 | Highly Destabilizing | 1.0 | D | 0.74 | deleterious | None | None | None | None | N |
L/R | 0.6935 | likely_pathogenic | 0.669 | pathogenic | -1.491 | Destabilizing | 1.0 | D | 0.742 | deleterious | D | 0.555482617 | None | None | N |
L/S | 0.8146 | likely_pathogenic | 0.8188 | pathogenic | -2.763 | Highly Destabilizing | 1.0 | D | 0.685 | prob.neutral | None | None | None | None | N |
L/T | 0.6815 | likely_pathogenic | 0.6882 | pathogenic | -2.466 | Highly Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
L/V | 0.3274 | likely_benign | 0.3114 | benign | -1.587 | Destabilizing | 0.999 | D | 0.515 | neutral | D | 0.587154863 | None | None | N |
L/W | 0.5647 | likely_pathogenic | 0.5675 | pathogenic | -1.869 | Destabilizing | 1.0 | D | 0.732 | prob.delet. | None | None | None | None | N |
L/Y | 0.5874 | likely_pathogenic | 0.596 | pathogenic | -1.619 | Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.