Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17618 | 53077;53078;53079 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
N2AB | 15977 | 48154;48155;48156 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
N2A | 15050 | 45373;45374;45375 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
N2B | 8553 | 25882;25883;25884 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
Novex-1 | 8678 | 26257;26258;26259 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
Novex-2 | 8745 | 26458;26459;26460 | chr2:178607935;178607934;178607933 | chr2:179472662;179472661;179472660 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs201213901 | -0.506 | 1.0 | N | 0.743 | 0.494 | None | gnomAD-2.1.1 | 1.00373E-03 | None | None | None | None | N | None | 4.13565E-04 | 5.66E-05 | None | 9.67E-05 | 0 | None | 0 | None | 4.39683E-04 | 1.95361E-03 | 9.82594E-04 |
R/C | rs201213901 | -0.506 | 1.0 | N | 0.743 | 0.494 | None | gnomAD-3.1.2 | 8.29723E-04 | None | None | None | None | N | None | 3.14025E-04 | 6.57E-05 | 0 | 5.77034E-04 | 0 | None | 4.71965E-04 | 0 | 1.54639E-03 | 0 | 0 |
R/C | rs201213901 | -0.506 | 1.0 | N | 0.743 | 0.494 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
R/C | rs201213901 | -0.506 | 1.0 | N | 0.743 | 0.494 | None | gnomAD-4.0.0 | 1.32556E-03 | None | None | None | None | N | None | 2.93545E-04 | 3.33589E-05 | None | 2.02867E-04 | 0 | None | 4.84466E-04 | 0 | 1.72141E-03 | 0 | 7.52795E-04 |
R/H | rs371538664 | -1.41 | 1.0 | N | 0.794 | 0.46 | None | gnomAD-2.1.1 | 1.8931E-04 | None | None | None | None | N | None | 4.14E-05 | 2.83E-05 | None | 3.57695E-03 | 1.54767E-04 | None | 0 | None | 0 | 7.03E-05 | 2.8082E-04 |
R/H | rs371538664 | -1.41 | 1.0 | N | 0.794 | 0.46 | None | gnomAD-3.1.2 | 1.5803E-04 | None | None | None | None | N | None | 0 | 0 | 0 | 5.48182E-03 | 1.95084E-04 | None | 0 | 0 | 5.89E-05 | 0 | 0 |
R/H | rs371538664 | -1.41 | 1.0 | N | 0.794 | 0.46 | None | gnomAD-4.0.0 | 1.34549E-04 | None | None | None | None | N | None | 1.33629E-05 | 3.33712E-05 | None | 4.22611E-03 | 2.01234E-04 | None | 0 | 4.93746E-04 | 5.25751E-05 | 0 | 2.40323E-04 |
R/S | rs201213901 | -0.647 | 1.0 | N | 0.744 | 0.384 | 0.386234084001 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
R/S | rs201213901 | -0.647 | 1.0 | N | 0.744 | 0.384 | 0.386234084001 | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/S | rs201213901 | -0.647 | 1.0 | N | 0.744 | 0.384 | 0.386234084001 | gnomAD-4.0.0 | 1.05408E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.18717E-05 | 0 | 4.80677E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8448 | likely_pathogenic | 0.7875 | pathogenic | -1.057 | Destabilizing | 0.999 | D | 0.651 | neutral | None | None | None | None | N |
R/C | 0.3775 | ambiguous | 0.2936 | benign | -0.963 | Destabilizing | 1.0 | D | 0.743 | deleterious | N | 0.489917567 | None | None | N |
R/D | 0.972 | likely_pathogenic | 0.953 | pathogenic | -0.186 | Destabilizing | 1.0 | D | 0.754 | deleterious | None | None | None | None | N |
R/E | 0.8171 | likely_pathogenic | 0.7448 | pathogenic | -0.079 | Destabilizing | 0.999 | D | 0.695 | prob.neutral | None | None | None | None | N |
R/F | 0.9145 | likely_pathogenic | 0.8687 | pathogenic | -1.051 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | None | None | None | None | N |
R/G | 0.8169 | likely_pathogenic | 0.7246 | pathogenic | -1.339 | Destabilizing | 1.0 | D | 0.672 | neutral | N | 0.474179942 | None | None | N |
R/H | 0.2178 | likely_benign | 0.1735 | benign | -1.666 | Destabilizing | 1.0 | D | 0.794 | deleterious | N | 0.475265897 | None | None | N |
R/I | 0.6972 | likely_pathogenic | 0.6143 | pathogenic | -0.302 | Destabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | N |
R/K | 0.2096 | likely_benign | 0.1882 | benign | -1.031 | Destabilizing | 0.998 | D | 0.558 | neutral | None | None | None | None | N |
R/L | 0.6161 | likely_pathogenic | 0.5392 | ambiguous | -0.302 | Destabilizing | 1.0 | D | 0.672 | neutral | N | 0.503589494 | None | None | N |
R/M | 0.7783 | likely_pathogenic | 0.6987 | pathogenic | -0.482 | Destabilizing | 1.0 | D | 0.777 | deleterious | None | None | None | None | N |
R/N | 0.9322 | likely_pathogenic | 0.9012 | pathogenic | -0.416 | Destabilizing | 1.0 | D | 0.781 | deleterious | None | None | None | None | N |
R/P | 0.79 | likely_pathogenic | 0.714 | pathogenic | -0.534 | Destabilizing | 1.0 | D | 0.741 | deleterious | N | 0.478019046 | None | None | N |
R/Q | 0.2322 | likely_benign | 0.1877 | benign | -0.665 | Destabilizing | 1.0 | D | 0.773 | deleterious | None | None | None | None | N |
R/S | 0.9016 | likely_pathogenic | 0.8589 | pathogenic | -1.252 | Destabilizing | 1.0 | D | 0.744 | deleterious | N | 0.501682552 | None | None | N |
R/T | 0.7315 | likely_pathogenic | 0.6628 | pathogenic | -0.971 | Destabilizing | 1.0 | D | 0.739 | prob.delet. | None | None | None | None | N |
R/V | 0.764 | likely_pathogenic | 0.6868 | pathogenic | -0.534 | Destabilizing | 1.0 | D | 0.755 | deleterious | None | None | None | None | N |
R/W | 0.5675 | likely_pathogenic | 0.459 | ambiguous | -0.689 | Destabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | N |
R/Y | 0.8143 | likely_pathogenic | 0.7279 | pathogenic | -0.396 | Destabilizing | 1.0 | D | 0.749 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.