Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17627 | 53104;53105;53106 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
N2AB | 15986 | 48181;48182;48183 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
N2A | 15059 | 45400;45401;45402 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
N2B | 8562 | 25909;25910;25911 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
Novex-1 | 8687 | 26284;26285;26286 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
Novex-2 | 8754 | 26485;26486;26487 | chr2:178607908;178607907;178607906 | chr2:179472635;179472634;179472633 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs767433978 | -0.816 | 1.0 | N | 0.707 | 0.319 | 0.504235531984 | gnomAD-2.1.1 | 8.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.6E-05 | None | 0 | None | 0 | 8.88E-06 | 0 |
R/C | rs767433978 | -0.816 | 1.0 | N | 0.707 | 0.319 | 0.504235531984 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs767433978 | -0.816 | 1.0 | N | 0.707 | 0.319 | 0.504235531984 | gnomAD-4.0.0 | 4.34014E-06 | None | None | None | None | N | None | 4.00898E-05 | 0 | None | 0 | 2.23594E-05 | None | 0 | 0 | 2.5438E-06 | 0 | 0 |
R/G | None | None | 0.988 | N | 0.587 | 0.34 | 0.512883945787 | gnomAD-4.0.0 | 6.84474E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99755E-07 | 0 | 0 |
R/H | rs536494011 | -1.296 | 1.0 | N | 0.628 | 0.299 | 0.17948927462 | gnomAD-2.1.1 | 5.36E-05 | None | None | None | None | N | None | 4.13E-05 | 0 | None | 0 | 0 | None | 0 | None | 4E-05 | 1.0157E-04 | 0 |
R/H | rs536494011 | -1.296 | 1.0 | N | 0.628 | 0.299 | 0.17948927462 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.42E-05 | 0 | 0 |
R/H | rs536494011 | -1.296 | 1.0 | N | 0.628 | 0.299 | 0.17948927462 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs536494011 | -1.296 | 1.0 | N | 0.628 | 0.299 | 0.17948927462 | gnomAD-4.0.0 | 3.3478E-05 | None | None | None | None | N | None | 2.66773E-05 | 3.33567E-05 | None | 0 | 0 | None | 1.5627E-05 | 0 | 3.56141E-05 | 2.19616E-05 | 8.0082E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.5903 | likely_pathogenic | 0.4528 | ambiguous | -0.918 | Destabilizing | 0.86 | D | 0.563 | neutral | None | None | None | None | N |
R/C | 0.1458 | likely_benign | 0.1126 | benign | -1.078 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | N | 0.456075188 | None | None | N |
R/D | 0.8432 | likely_pathogenic | 0.7408 | pathogenic | -0.832 | Destabilizing | 0.993 | D | 0.691 | prob.neutral | None | None | None | None | N |
R/E | 0.5629 | ambiguous | 0.4399 | ambiguous | -0.633 | Destabilizing | 0.926 | D | 0.567 | neutral | None | None | None | None | N |
R/F | 0.7538 | likely_pathogenic | 0.6134 | pathogenic | -0.323 | Destabilizing | 0.915 | D | 0.717 | prob.delet. | None | None | None | None | N |
R/G | 0.3719 | ambiguous | 0.2514 | benign | -1.257 | Destabilizing | 0.988 | D | 0.587 | neutral | N | 0.478431178 | None | None | N |
R/H | 0.1397 | likely_benign | 0.1112 | benign | -1.391 | Destabilizing | 1.0 | D | 0.628 | neutral | N | 0.501962193 | None | None | N |
R/I | 0.5958 | likely_pathogenic | 0.4492 | ambiguous | 0.03 | Stabilizing | 0.915 | D | 0.663 | neutral | None | None | None | None | N |
R/K | 0.1399 | likely_benign | 0.1094 | benign | -0.775 | Destabilizing | 0.837 | D | 0.536 | neutral | None | None | None | None | N |
R/L | 0.3109 | likely_benign | 0.1966 | benign | 0.03 | Stabilizing | 0.036 | N | 0.46 | neutral | N | 0.431464745 | None | None | N |
R/M | 0.467 | ambiguous | 0.3467 | ambiguous | -0.633 | Destabilizing | 0.956 | D | 0.668 | neutral | None | None | None | None | N |
R/N | 0.6297 | likely_pathogenic | 0.5261 | ambiguous | -0.993 | Destabilizing | 0.993 | D | 0.615 | neutral | None | None | None | None | N |
R/P | 0.4836 | ambiguous | 0.3555 | ambiguous | -0.27 | Destabilizing | 0.996 | D | 0.676 | prob.neutral | N | 0.471081926 | None | None | N |
R/Q | 0.1293 | likely_benign | 0.1028 | benign | -0.845 | Destabilizing | 0.993 | D | 0.616 | neutral | None | None | None | None | N |
R/S | 0.6601 | likely_pathogenic | 0.5192 | ambiguous | -1.482 | Destabilizing | 0.988 | D | 0.611 | neutral | N | 0.486011306 | None | None | N |
R/T | 0.3281 | likely_benign | 0.2281 | benign | -1.081 | Destabilizing | 0.86 | D | 0.602 | neutral | None | None | None | None | N |
R/V | 0.6295 | likely_pathogenic | 0.4805 | ambiguous | -0.27 | Destabilizing | 0.754 | D | 0.625 | neutral | None | None | None | None | N |
R/W | 0.3219 | likely_benign | 0.2297 | benign | -0.087 | Destabilizing | 0.998 | D | 0.711 | prob.delet. | None | None | None | None | N |
R/Y | 0.5586 | ambiguous | 0.4219 | ambiguous | 0.113 | Stabilizing | 0.978 | D | 0.677 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.