Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17643 | 53152;53153;53154 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
N2AB | 16002 | 48229;48230;48231 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
N2A | 15075 | 45448;45449;45450 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
N2B | 8578 | 25957;25958;25959 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
Novex-1 | 8703 | 26332;26333;26334 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
Novex-2 | 8770 | 26533;26534;26535 | chr2:178607860;178607859;178607858 | chr2:179472587;179472586;179472585 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/L | rs571636340 | None | 1.0 | N | 0.735 | 0.506 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/L | rs571636340 | None | 1.0 | N | 0.735 | 0.506 | None | gnomAD-4.0.0 | 6.58146E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47236E-05 | 0 | 0 |
R/Q | rs571636340 | -0.978 | 1.0 | N | 0.79 | 0.395 | 0.356072328145 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.62E-05 | None | 0 | None | 0 | 0 | 0 |
R/Q | rs571636340 | -0.978 | 1.0 | N | 0.79 | 0.395 | 0.356072328145 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.94553E-04 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/Q | rs571636340 | -0.978 | 1.0 | N | 0.79 | 0.395 | 0.356072328145 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
R/Q | rs571636340 | -0.978 | 1.0 | N | 0.79 | 0.395 | 0.356072328145 | gnomAD-4.0.0 | 5.57973E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 4.47668E-05 | None | 0 | 0 | 5.08767E-06 | 1.09827E-05 | 0 |
R/W | rs375944265 | -0.601 | 1.0 | D | 0.757 | 0.453 | None | gnomAD-2.1.1 | 7.51E-05 | None | None | None | None | N | None | 7.03002E-04 | 2.83E-05 | None | 0 | 5.18E-05 | None | 3.27E-05 | None | 0 | 7.82E-06 | 0 |
R/W | rs375944265 | -0.601 | 1.0 | D | 0.757 | 0.453 | None | gnomAD-3.1.2 | 2.96084E-04 | None | None | None | None | N | None | 7.72201E-04 | 4.59318E-04 | 0 | 0 | 5.83431E-04 | None | 0 | 0 | 2.94E-05 | 0 | 4.78011E-04 |
R/W | rs375944265 | -0.601 | 1.0 | D | 0.757 | 0.453 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 3E-03 | 0 | None | None | None | 0 | None |
R/W | rs375944265 | -0.601 | 1.0 | D | 0.757 | 0.453 | None | gnomAD-4.0.0 | 5.33156E-05 | None | None | None | None | N | None | 6.13481E-04 | 1.501E-04 | None | 0 | 6.71291E-05 | None | 0 | 0 | 1.86548E-05 | 1.09808E-05 | 8.00769E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8714 | likely_pathogenic | 0.8743 | pathogenic | -1.553 | Destabilizing | 0.999 | D | 0.647 | neutral | None | None | None | None | N |
R/C | 0.3177 | likely_benign | 0.3364 | benign | -1.595 | Destabilizing | 1.0 | D | 0.793 | deleterious | None | None | None | None | N |
R/D | 0.9876 | likely_pathogenic | 0.9891 | pathogenic | -0.829 | Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
R/E | 0.8613 | likely_pathogenic | 0.8687 | pathogenic | -0.639 | Destabilizing | 0.999 | D | 0.699 | prob.neutral | None | None | None | None | N |
R/F | 0.8998 | likely_pathogenic | 0.9109 | pathogenic | -0.942 | Destabilizing | 1.0 | D | 0.825 | deleterious | None | None | None | None | N |
R/G | 0.8622 | likely_pathogenic | 0.8693 | pathogenic | -1.891 | Destabilizing | 1.0 | D | 0.735 | prob.delet. | D | 0.538842416 | None | None | N |
R/H | 0.2133 | likely_benign | 0.2376 | benign | -1.858 | Destabilizing | 1.0 | D | 0.825 | deleterious | None | None | None | None | N |
R/I | 0.7436 | likely_pathogenic | 0.7568 | pathogenic | -0.594 | Destabilizing | 1.0 | D | 0.81 | deleterious | None | None | None | None | N |
R/K | 0.2738 | likely_benign | 0.2681 | benign | -1.254 | Destabilizing | 0.998 | D | 0.673 | neutral | None | None | None | None | N |
R/L | 0.6872 | likely_pathogenic | 0.7122 | pathogenic | -0.594 | Destabilizing | 1.0 | D | 0.735 | prob.delet. | N | 0.509635345 | None | None | N |
R/M | 0.7372 | likely_pathogenic | 0.7513 | pathogenic | -1.056 | Destabilizing | 1.0 | D | 0.812 | deleterious | None | None | None | None | N |
R/N | 0.9467 | likely_pathogenic | 0.9529 | pathogenic | -1.111 | Destabilizing | 1.0 | D | 0.791 | deleterious | None | None | None | None | N |
R/P | 0.9965 | likely_pathogenic | 0.997 | pathogenic | -0.9 | Destabilizing | 1.0 | D | 0.783 | deleterious | D | 0.539349395 | None | None | N |
R/Q | 0.2139 | likely_benign | 0.2164 | benign | -1.026 | Destabilizing | 1.0 | D | 0.79 | deleterious | N | 0.482501735 | None | None | N |
R/S | 0.9146 | likely_pathogenic | 0.9206 | pathogenic | -1.912 | Destabilizing | 1.0 | D | 0.748 | deleterious | None | None | None | None | N |
R/T | 0.8197 | likely_pathogenic | 0.832 | pathogenic | -1.522 | Destabilizing | 1.0 | D | 0.746 | deleterious | None | None | None | None | N |
R/V | 0.788 | likely_pathogenic | 0.7959 | pathogenic | -0.9 | Destabilizing | 1.0 | D | 0.775 | deleterious | None | None | None | None | N |
R/W | 0.4651 | ambiguous | 0.4769 | ambiguous | -0.553 | Destabilizing | 1.0 | D | 0.757 | deleterious | D | 0.539095906 | None | None | N |
R/Y | 0.8044 | likely_pathogenic | 0.827 | pathogenic | -0.322 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.