Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17699 | 53320;53321;53322 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
N2AB | 16058 | 48397;48398;48399 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
N2A | 15131 | 45616;45617;45618 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
N2B | 8634 | 26125;26126;26127 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
Novex-1 | 8759 | 26500;26501;26502 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
Novex-2 | 8826 | 26701;26702;26703 | chr2:178607593;178607592;178607591 | chr2:179472320;179472319;179472318 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs760963888 | -0.043 | 1.0 | N | 0.651 | 0.412 | 0.612736520223 | gnomAD-2.1.1 | 2.51E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 3.15E-05 | 1.40568E-04 |
R/C | rs760963888 | -0.043 | 1.0 | N | 0.651 | 0.412 | 0.612736520223 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.95E-05 | 0 | 0 |
R/C | rs760963888 | -0.043 | 1.0 | N | 0.651 | 0.412 | 0.612736520223 | gnomAD-4.0.0 | 1.48798E-05 | None | None | None | None | I | None | 0 | 6.67178E-05 | None | 0 | 0 | None | 0 | 0 | 1.18708E-05 | 6.58848E-05 | 0 |
R/H | None | -0.609 | 1.0 | N | 0.501 | 0.365 | None | gnomAD-2.1.1 | 1.77036E-03 | None | None | None | None | I | None | 6.62691E-04 | 1.07527E-03 | None | 1.35633E-03 | 7.19868E-04 | None | 1.69957E-03 | None | 1.60013E-04 | 2.73852E-03 | 1.12423E-03 |
R/H | None | -0.609 | 1.0 | N | 0.501 | 0.365 | None | gnomAD-3.1.2 | 1.58636E-03 | None | None | None | None | I | None | 6.76459E-04 | 1.37777E-03 | 0 | 1.15274E-03 | 5.8434E-04 | None | 2.82805E-04 | 0 | 2.57626E-03 | 1.03605E-03 | 9.56023E-04 |
R/H | None | -0.609 | 1.0 | N | 0.501 | 0.365 | None | 1000 genomes | 1.19808E-03 | None | None | None | None | I | None | 8E-04 | 1.4E-03 | None | None | 0 | 3E-03 | None | None | None | 1E-03 | None |
R/H | None | -0.609 | 1.0 | N | 0.501 | 0.365 | None | gnomAD-4.0.0 | 2.24162E-03 | None | None | None | None | I | None | 5.60403E-04 | 1.20052E-03 | None | 1.01372E-03 | 4.24202E-04 | None | 5.1598E-04 | 4.9554E-04 | 2.67599E-03 | 1.72395E-03 | 1.66549E-03 |
R/L | rs72646808 | 0.511 | 0.996 | N | 0.565 | 0.368 | 0.54988173901 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.96E-06 | 0 |
R/L | rs72646808 | 0.511 | 0.996 | N | 0.565 | 0.368 | 0.54988173901 | gnomAD-4.0.0 | 1.36885E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79944E-06 | 0 | 0 |
R/P | rs72646808 | None | 1.0 | N | 0.585 | 0.415 | 0.608695890411 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/P | rs72646808 | None | 1.0 | N | 0.585 | 0.415 | 0.608695890411 | gnomAD-4.0.0 | 1.85989E-06 | None | None | None | None | I | None | 4.00941E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9375 | likely_pathogenic | 0.9517 | pathogenic | 0.009 | Stabilizing | 0.985 | D | 0.559 | neutral | None | None | None | None | I |
R/C | 0.4384 | ambiguous | 0.5004 | ambiguous | -0.314 | Destabilizing | 1.0 | D | 0.651 | neutral | N | 0.494442196 | None | None | I |
R/D | 0.9762 | likely_pathogenic | 0.9822 | pathogenic | -0.366 | Destabilizing | 0.998 | D | 0.55 | neutral | None | None | None | None | I |
R/E | 0.8679 | likely_pathogenic | 0.8928 | pathogenic | -0.334 | Destabilizing | 0.985 | D | 0.516 | neutral | None | None | None | None | I |
R/F | 0.8908 | likely_pathogenic | 0.8928 | pathogenic | -0.34 | Destabilizing | 0.999 | D | 0.607 | neutral | None | None | None | None | I |
R/G | 0.9012 | likely_pathogenic | 0.9284 | pathogenic | -0.109 | Destabilizing | 0.996 | D | 0.565 | neutral | N | 0.485794915 | None | None | I |
R/H | 0.2541 | likely_benign | 0.259 | benign | -0.594 | Destabilizing | 1.0 | D | 0.501 | neutral | N | 0.489460696 | None | None | I |
R/I | 0.6213 | likely_pathogenic | 0.6548 | pathogenic | 0.273 | Stabilizing | 0.999 | D | 0.604 | neutral | None | None | None | None | I |
R/K | 0.1858 | likely_benign | 0.1998 | benign | -0.242 | Destabilizing | 0.271 | N | 0.316 | neutral | None | None | None | None | I |
R/L | 0.6889 | likely_pathogenic | 0.7177 | pathogenic | 0.273 | Stabilizing | 0.996 | D | 0.565 | neutral | N | 0.493962438 | None | None | I |
R/M | 0.768 | likely_pathogenic | 0.7931 | pathogenic | -0.145 | Destabilizing | 1.0 | D | 0.53 | neutral | None | None | None | None | I |
R/N | 0.9207 | likely_pathogenic | 0.9363 | pathogenic | -0.181 | Destabilizing | 0.998 | D | 0.499 | neutral | None | None | None | None | I |
R/P | 0.9916 | likely_pathogenic | 0.9926 | pathogenic | 0.201 | Stabilizing | 1.0 | D | 0.585 | neutral | N | 0.512546451 | None | None | I |
R/Q | 0.2753 | likely_benign | 0.3024 | benign | -0.2 | Destabilizing | 0.996 | D | 0.513 | neutral | None | None | None | None | I |
R/S | 0.93 | likely_pathogenic | 0.9482 | pathogenic | -0.319 | Destabilizing | 0.992 | D | 0.593 | neutral | N | 0.484129447 | None | None | I |
R/T | 0.8254 | likely_pathogenic | 0.8565 | pathogenic | -0.192 | Destabilizing | 0.993 | D | 0.54 | neutral | None | None | None | None | I |
R/V | 0.7806 | likely_pathogenic | 0.7993 | pathogenic | 0.201 | Stabilizing | 0.998 | D | 0.585 | neutral | None | None | None | None | I |
R/W | 0.4603 | ambiguous | 0.4701 | ambiguous | -0.554 | Destabilizing | 1.0 | D | 0.657 | neutral | None | None | None | None | I |
R/Y | 0.7358 | likely_pathogenic | 0.7467 | pathogenic | -0.157 | Destabilizing | 0.999 | D | 0.595 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.