Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17717 | 53374;53375;53376 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
N2AB | 16076 | 48451;48452;48453 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
N2A | 15149 | 45670;45671;45672 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
N2B | 8652 | 26179;26180;26181 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
Novex-1 | 8777 | 26554;26555;26556 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
Novex-2 | 8844 | 26755;26756;26757 | chr2:178607539;178607538;178607537 | chr2:179472266;179472265;179472264 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs369001587 | -0.718 | 1.0 | N | 0.604 | 0.371 | None | gnomAD-2.1.1 | 1.61E-05 | None | None | None | None | N | None | 6.47E-05 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 8.91E-06 | 0 |
R/C | rs369001587 | -0.718 | 1.0 | N | 0.604 | 0.371 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/C | rs369001587 | -0.718 | 1.0 | N | 0.604 | 0.371 | None | gnomAD-4.0.0 | 7.43944E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 4.68765E-05 | 0 | 3.39165E-06 | 4.39242E-05 | 1.60215E-05 |
R/H | rs757018821 | -1.571 | 0.997 | N | 0.406 | 0.334 | 0.262175524916 | gnomAD-2.1.1 | 5.72E-05 | None | None | None | None | N | None | 2.48242E-04 | 1.13116E-04 | None | 0 | 0 | None | 1.30719E-04 | None | 0 | 1.57E-05 | 0 |
R/H | rs757018821 | -1.571 | 0.997 | N | 0.406 | 0.334 | 0.262175524916 | gnomAD-3.1.2 | 6.58E-05 | None | None | None | None | N | None | 2.17402E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07039E-04 | 0 |
R/H | rs757018821 | -1.571 | 0.997 | N | 0.406 | 0.334 | 0.262175524916 | gnomAD-4.0.0 | 2.54175E-05 | None | None | None | None | N | None | 2.00476E-04 | 5.003E-05 | None | 0 | 2.23095E-05 | None | 0 | 0 | 4.23954E-06 | 1.53725E-04 | 4.806E-05 |
R/P | rs757018821 | -0.22 | 0.994 | N | 0.477 | 0.383 | 0.406120066682 | gnomAD-2.1.1 | 7.15E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.02659E-04 | None | 0 | None | 0 | 0 | 0 |
R/P | rs757018821 | -0.22 | 0.994 | N | 0.477 | 0.383 | 0.406120066682 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.94704E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/P | rs757018821 | -0.22 | 0.994 | N | 0.477 | 0.383 | 0.406120066682 | gnomAD-4.0.0 | 1.23988E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 4.4619E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7079 | likely_pathogenic | 0.7942 | pathogenic | -0.686 | Destabilizing | 0.919 | D | 0.375 | neutral | None | None | None | None | N |
R/C | 0.298 | likely_benign | 0.4633 | ambiguous | -0.532 | Destabilizing | 1.0 | D | 0.604 | neutral | N | 0.504874134 | None | None | N |
R/D | 0.8386 | likely_pathogenic | 0.8761 | pathogenic | 0.074 | Stabilizing | 0.851 | D | 0.449 | neutral | None | None | None | None | N |
R/E | 0.6537 | likely_pathogenic | 0.723 | pathogenic | 0.202 | Stabilizing | 0.851 | D | 0.364 | neutral | None | None | None | None | N |
R/F | 0.8522 | likely_pathogenic | 0.9139 | pathogenic | -0.512 | Destabilizing | 0.996 | D | 0.57 | neutral | None | None | None | None | N |
R/G | 0.6195 | likely_pathogenic | 0.735 | pathogenic | -1.007 | Destabilizing | 0.956 | D | 0.421 | neutral | N | 0.470018296 | None | None | N |
R/H | 0.1691 | likely_benign | 0.19 | benign | -1.372 | Destabilizing | 0.997 | D | 0.406 | neutral | N | 0.486902314 | None | None | N |
R/I | 0.5538 | ambiguous | 0.6965 | pathogenic | 0.175 | Stabilizing | 0.988 | D | 0.548 | neutral | None | None | None | None | N |
R/K | 0.1995 | likely_benign | 0.25 | benign | -0.619 | Destabilizing | 0.034 | N | 0.187 | neutral | None | None | None | None | N |
R/L | 0.52 | ambiguous | 0.6487 | pathogenic | 0.175 | Stabilizing | 0.956 | D | 0.441 | neutral | N | 0.48862953 | None | None | N |
R/M | 0.6077 | likely_pathogenic | 0.7397 | pathogenic | -0.15 | Destabilizing | 0.999 | D | 0.436 | neutral | None | None | None | None | N |
R/N | 0.7144 | likely_pathogenic | 0.7875 | pathogenic | -0.074 | Destabilizing | 0.132 | N | 0.243 | neutral | None | None | None | None | N |
R/P | 0.9573 | likely_pathogenic | 0.9755 | pathogenic | -0.091 | Destabilizing | 0.994 | D | 0.477 | neutral | N | 0.489389999 | None | None | N |
R/Q | 0.2106 | likely_benign | 0.2803 | benign | -0.224 | Destabilizing | 0.976 | D | 0.445 | neutral | None | None | None | None | N |
R/S | 0.7795 | likely_pathogenic | 0.8534 | pathogenic | -0.832 | Destabilizing | 0.956 | D | 0.385 | neutral | N | 0.467309271 | None | None | N |
R/T | 0.5431 | ambiguous | 0.6879 | pathogenic | -0.517 | Destabilizing | 0.919 | D | 0.409 | neutral | None | None | None | None | N |
R/V | 0.6597 | likely_pathogenic | 0.7718 | pathogenic | -0.091 | Destabilizing | 0.988 | D | 0.549 | neutral | None | None | None | None | N |
R/W | 0.4821 | ambiguous | 0.606 | pathogenic | -0.192 | Destabilizing | 0.999 | D | 0.61 | neutral | None | None | None | None | N |
R/Y | 0.6948 | likely_pathogenic | 0.7852 | pathogenic | 0.109 | Stabilizing | 0.996 | D | 0.487 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.