Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18215 | 54868;54869;54870 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
N2AB | 16574 | 49945;49946;49947 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
N2A | 15647 | 47164;47165;47166 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
N2B | 9150 | 27673;27674;27675 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
Novex-1 | 9275 | 28048;28049;28050 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
Novex-2 | 9342 | 28249;28250;28251 | chr2:178604044;178604043;178604042 | chr2:179468771;179468770;179468769 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs187167219 | -0.881 | 1.0 | N | 0.703 | 0.383 | None | gnomAD-2.1.1 | 6.44E-05 | None | None | None | None | N | None | 6.47E-05 | 0 | None | 0 | 7.24153E-04 | None | 0 | None | 0 | 1.78E-05 | 0 |
R/C | rs187167219 | -0.881 | 1.0 | N | 0.703 | 0.383 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 3.89864E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs187167219 | -0.881 | 1.0 | N | 0.703 | 0.383 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
R/C | rs187167219 | -0.881 | 1.0 | N | 0.703 | 0.383 | None | gnomAD-4.0.0 | 2.04608E-05 | None | None | None | None | N | None | 1.33472E-05 | 0 | None | 0 | 4.91137E-04 | None | 0 | 0 | 7.63245E-06 | 0 | 1.60179E-05 |
R/H | rs183010574 | -1.87 | 1.0 | N | 0.661 | 0.306 | 0.342865806769 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 1.65728E-04 |
R/H | rs183010574 | -1.87 | 1.0 | N | 0.661 | 0.306 | 0.342865806769 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs183010574 | -1.87 | 1.0 | N | 0.661 | 0.306 | 0.342865806769 | gnomAD-4.0.0 | 1.24007E-05 | None | None | None | None | N | None | 1.33608E-05 | 1.66817E-05 | None | 0 | 0 | None | 0 | 0 | 1.01764E-05 | 2.19713E-05 | 6.40902E-05 |
R/P | rs183010574 | -0.756 | 1.0 | N | 0.773 | 0.321 | None | gnomAD-2.1.1 | 2.86E-05 | None | None | None | None | N | None | 4.14E-05 | 8.48E-05 | None | 0 | 0 | None | 0 | None | 0 | 3.13E-05 | 0 |
R/P | rs183010574 | -0.756 | 1.0 | N | 0.773 | 0.321 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/P | rs183010574 | -0.756 | 1.0 | N | 0.773 | 0.321 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/P | rs183010574 | -0.756 | 1.0 | N | 0.773 | 0.321 | None | gnomAD-4.0.0 | 8.67985E-06 | None | None | None | None | N | None | 1.3339E-05 | 6.67045E-05 | None | 0 | 0 | None | 0 | 0 | 7.63236E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.875 | likely_pathogenic | 0.8673 | pathogenic | -0.772 | Destabilizing | 0.992 | D | 0.607 | neutral | None | None | None | None | N |
R/C | 0.6713 | likely_pathogenic | 0.6442 | pathogenic | -0.725 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | N | 0.473623737 | None | None | N |
R/D | 0.9758 | likely_pathogenic | 0.9777 | pathogenic | 0.066 | Stabilizing | 0.999 | D | 0.755 | deleterious | None | None | None | None | N |
R/E | 0.8826 | likely_pathogenic | 0.8833 | pathogenic | 0.204 | Stabilizing | 0.992 | D | 0.535 | neutral | None | None | None | None | N |
R/F | 0.9363 | likely_pathogenic | 0.936 | pathogenic | -0.592 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | None | None | None | None | N |
R/G | 0.8673 | likely_pathogenic | 0.8534 | pathogenic | -1.077 | Destabilizing | 0.998 | D | 0.659 | neutral | N | 0.472863268 | None | None | N |
R/H | 0.4162 | ambiguous | 0.3883 | ambiguous | -1.457 | Destabilizing | 1.0 | D | 0.661 | neutral | N | 0.50706973 | None | None | N |
R/I | 0.7875 | likely_pathogenic | 0.8062 | pathogenic | 0.047 | Stabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | N |
R/K | 0.216 | likely_benign | 0.2494 | benign | -0.588 | Destabilizing | 0.611 | D | 0.233 | neutral | None | None | None | None | N |
R/L | 0.6865 | likely_pathogenic | 0.6669 | pathogenic | 0.047 | Stabilizing | 0.998 | D | 0.659 | neutral | N | 0.490121551 | None | None | N |
R/M | 0.8029 | likely_pathogenic | 0.8188 | pathogenic | -0.397 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | N |
R/N | 0.9524 | likely_pathogenic | 0.9534 | pathogenic | -0.215 | Destabilizing | 0.999 | D | 0.637 | neutral | None | None | None | None | N |
R/P | 0.7857 | likely_pathogenic | 0.7566 | pathogenic | -0.205 | Destabilizing | 1.0 | D | 0.773 | deleterious | N | 0.46993828 | None | None | N |
R/Q | 0.3564 | ambiguous | 0.3451 | ambiguous | -0.312 | Destabilizing | 0.998 | D | 0.638 | neutral | None | None | None | None | N |
R/S | 0.9479 | likely_pathogenic | 0.9422 | pathogenic | -0.963 | Destabilizing | 0.996 | D | 0.681 | prob.neutral | N | 0.479864485 | None | None | N |
R/T | 0.8346 | likely_pathogenic | 0.8361 | pathogenic | -0.634 | Destabilizing | 0.999 | D | 0.733 | prob.delet. | None | None | None | None | N |
R/V | 0.7968 | likely_pathogenic | 0.808 | pathogenic | -0.205 | Destabilizing | 0.999 | D | 0.755 | deleterious | None | None | None | None | N |
R/W | 0.7189 | likely_pathogenic | 0.6774 | pathogenic | -0.299 | Destabilizing | 1.0 | D | 0.67 | neutral | None | None | None | None | N |
R/Y | 0.8832 | likely_pathogenic | 0.8721 | pathogenic | -0.011 | Destabilizing | 1.0 | D | 0.762 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.