Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18272 | 55039;55040;55041 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
N2AB | 16631 | 50116;50117;50118 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
N2A | 15704 | 47335;47336;47337 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
N2B | 9207 | 27844;27845;27846 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
Novex-1 | 9332 | 28219;28220;28221 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
Novex-2 | 9399 | 28420;28421;28422 | chr2:178602588;178602587;178602586 | chr2:179467315;179467314;179467313 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | rs892008187 | None | 0.908 | N | 0.643 | 0.237 | 0.390842690916 | gnomAD-4.0.0 | 7.44476E-07 | None | None | None | None | I | None | 3.44661E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
P/S | None | None | 0.993 | N | 0.587 | 0.316 | 0.252162846088 | gnomAD-4.0.0 | 3.99739E-06 | None | None | None | None | I | None | 0 | 4.98703E-05 | None | 0 | 0 | None | 0 | 0 | 3.45149E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.1336 | likely_benign | 0.1024 | benign | -0.323 | Destabilizing | 0.908 | D | 0.556 | neutral | N | 0.475073362 | None | None | I |
P/C | 0.524 | ambiguous | 0.4038 | ambiguous | -0.559 | Destabilizing | 1.0 | D | 0.805 | deleterious | None | None | None | None | I |
P/D | 0.8516 | likely_pathogenic | 0.7574 | pathogenic | -0.002 | Destabilizing | 0.998 | D | 0.616 | neutral | None | None | None | None | I |
P/E | 0.4863 | ambiguous | 0.392 | ambiguous | -0.129 | Destabilizing | 0.995 | D | 0.611 | neutral | None | None | None | None | I |
P/F | 0.6906 | likely_pathogenic | 0.5478 | ambiguous | -0.733 | Destabilizing | 0.999 | D | 0.803 | deleterious | None | None | None | None | I |
P/G | 0.6519 | likely_pathogenic | 0.531 | ambiguous | -0.411 | Destabilizing | 0.995 | D | 0.585 | neutral | None | None | None | None | I |
P/H | 0.3978 | ambiguous | 0.2853 | benign | -0.093 | Destabilizing | 1.0 | D | 0.776 | deleterious | None | None | None | None | I |
P/I | 0.2172 | likely_benign | 0.1602 | benign | -0.251 | Destabilizing | 0.929 | D | 0.65 | prob.neutral | None | None | None | None | I |
P/K | 0.3123 | likely_benign | 0.2483 | benign | -0.087 | Destabilizing | 0.995 | D | 0.619 | neutral | None | None | None | None | I |
P/L | 0.1318 | likely_benign | 0.1006 | benign | -0.251 | Destabilizing | 0.908 | D | 0.643 | neutral | N | 0.463934548 | None | None | I |
P/M | 0.3929 | ambiguous | 0.3007 | benign | -0.207 | Destabilizing | 0.999 | D | 0.735 | deleterious | None | None | None | None | I |
P/N | 0.714 | likely_pathogenic | 0.5797 | pathogenic | 0.121 | Stabilizing | 0.998 | D | 0.781 | deleterious | None | None | None | None | I |
P/Q | 0.26 | likely_benign | 0.1849 | benign | -0.144 | Destabilizing | 0.998 | D | 0.584 | neutral | N | 0.504488378 | None | None | I |
P/R | 0.2312 | likely_benign | 0.1626 | benign | 0.348 | Stabilizing | 0.993 | D | 0.779 | deleterious | N | 0.496219492 | None | None | I |
P/S | 0.2873 | likely_benign | 0.209 | benign | -0.246 | Destabilizing | 0.993 | D | 0.587 | neutral | N | 0.488839659 | None | None | I |
P/T | 0.1848 | likely_benign | 0.1322 | benign | -0.275 | Destabilizing | 0.986 | D | 0.589 | neutral | N | 0.514830726 | None | None | I |
P/V | 0.1524 | likely_benign | 0.1136 | benign | -0.242 | Destabilizing | 0.075 | N | 0.371 | neutral | None | None | None | None | I |
P/W | 0.8665 | likely_pathogenic | 0.7547 | pathogenic | -0.79 | Destabilizing | 1.0 | D | 0.796 | deleterious | None | None | None | None | I |
P/Y | 0.6858 | likely_pathogenic | 0.551 | ambiguous | -0.448 | Destabilizing | 0.998 | D | 0.803 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.