Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18275 | 55048;55049;55050 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
N2AB | 16634 | 50125;50126;50127 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
N2A | 15707 | 47344;47345;47346 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
N2B | 9210 | 27853;27854;27855 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
Novex-1 | 9335 | 28228;28229;28230 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
Novex-2 | 9402 | 28429;28430;28431 | chr2:178602579;178602578;178602577 | chr2:179467306;179467305;179467304 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | rs765408419 | -1.615 | None | N | 0.355 | 0.101 | 0.12205267543 | gnomAD-2.1.1 | 2.18E-05 | None | None | None | None | N | None | 0 | 1.96592E-04 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
P/A | rs765408419 | -1.615 | None | N | 0.355 | 0.101 | 0.12205267543 | gnomAD-4.0.0 | 5.64364E-06 | None | None | None | None | N | None | 0 | 1.22249E-04 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
P/L | None | None | 0.027 | N | 0.636 | 0.368 | 0.53046153047 | gnomAD-4.0.0 | 1.87755E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.80044E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0962 | likely_benign | 0.0626 | benign | -1.341 | Destabilizing | None | N | 0.355 | neutral | N | 0.431107746 | None | None | N |
P/C | 0.505 | ambiguous | 0.3545 | ambiguous | -1.043 | Destabilizing | 0.824 | D | 0.804 | deleterious | None | None | None | None | N |
P/D | 0.8399 | likely_pathogenic | 0.7035 | pathogenic | -1.614 | Destabilizing | 0.149 | N | 0.679 | prob.neutral | None | None | None | None | N |
P/E | 0.5252 | ambiguous | 0.3537 | ambiguous | -1.687 | Destabilizing | 0.149 | N | 0.649 | neutral | None | None | None | None | N |
P/F | 0.6307 | likely_pathogenic | 0.4646 | ambiguous | -1.453 | Destabilizing | 0.38 | N | 0.803 | deleterious | None | None | None | None | N |
P/G | 0.5032 | ambiguous | 0.3282 | benign | -1.556 | Destabilizing | 0.035 | N | 0.666 | neutral | None | None | None | None | N |
P/H | 0.3682 | ambiguous | 0.2425 | benign | -1.026 | Destabilizing | 0.824 | D | 0.791 | deleterious | None | None | None | None | N |
P/I | 0.4184 | ambiguous | 0.303 | benign | -0.876 | Destabilizing | 0.081 | N | 0.759 | deleterious | None | None | None | None | N |
P/K | 0.3425 | ambiguous | 0.2296 | benign | -0.981 | Destabilizing | 0.081 | N | 0.657 | neutral | None | None | None | None | N |
P/L | 0.257 | likely_benign | 0.1561 | benign | -0.876 | Destabilizing | 0.027 | N | 0.636 | neutral | N | 0.502910168 | None | None | N |
P/M | 0.3996 | ambiguous | 0.2752 | benign | -0.582 | Destabilizing | 0.007 | N | 0.483 | neutral | None | None | None | None | N |
P/N | 0.6443 | likely_pathogenic | 0.4775 | ambiguous | -0.796 | Destabilizing | 0.235 | N | 0.769 | deleterious | None | None | None | None | N |
P/Q | 0.2711 | likely_benign | 0.1627 | benign | -1.139 | Destabilizing | 0.317 | N | 0.713 | prob.delet. | N | 0.484841912 | None | None | N |
P/R | 0.2794 | likely_benign | 0.165 | benign | -0.352 | Destabilizing | 0.317 | N | 0.767 | deleterious | N | 0.485348891 | None | None | N |
P/S | 0.2124 | likely_benign | 0.1276 | benign | -1.201 | Destabilizing | 0.002 | N | 0.391 | neutral | N | 0.500415903 | None | None | N |
P/T | 0.2422 | likely_benign | 0.1518 | benign | -1.181 | Destabilizing | 0.062 | N | 0.639 | neutral | N | 0.502403189 | None | None | N |
P/V | 0.2984 | likely_benign | 0.2048 | benign | -0.998 | Destabilizing | 0.035 | N | 0.677 | prob.neutral | None | None | None | None | N |
P/W | 0.8573 | likely_pathogenic | 0.7103 | pathogenic | -1.523 | Destabilizing | 0.935 | D | 0.792 | deleterious | None | None | None | None | N |
P/Y | 0.6325 | likely_pathogenic | 0.4718 | ambiguous | -1.22 | Destabilizing | 0.555 | D | 0.808 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.