Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18343 | 55252;55253;55254 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
N2AB | 16702 | 50329;50330;50331 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
N2A | 15775 | 47548;47549;47550 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
N2B | 9278 | 28057;28058;28059 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
Novex-1 | 9403 | 28432;28433;28434 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
Novex-2 | 9470 | 28633;28634;28635 | chr2:178602375;178602374;178602373 | chr2:179467102;179467101;179467100 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/K | rs775796823 | -0.496 | None | N | 0.089 | 0.105 | 0.162503812791 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/K | rs775796823 | -0.496 | None | N | 0.089 | 0.105 | 0.162503812791 | gnomAD-4.0.0 | 6.37296E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.72334E-06 | 2.86681E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3895 | ambiguous | 0.4498 | ambiguous | -0.604 | Destabilizing | 0.035 | N | 0.315 | neutral | None | None | None | None | N |
R/C | 0.1845 | likely_benign | 0.2044 | benign | -0.531 | Destabilizing | 0.935 | D | 0.419 | neutral | None | None | None | None | N |
R/D | 0.7255 | likely_pathogenic | 0.7669 | pathogenic | -0.109 | Destabilizing | 0.149 | N | 0.421 | neutral | None | None | None | None | N |
R/E | 0.3617 | ambiguous | 0.4091 | ambiguous | 0.064 | Stabilizing | 0.035 | N | 0.323 | neutral | None | None | None | None | N |
R/F | 0.6105 | likely_pathogenic | 0.6538 | pathogenic | -0.134 | Destabilizing | 0.791 | D | 0.421 | neutral | None | None | None | None | N |
R/G | 0.2374 | likely_benign | 0.2986 | benign | -0.962 | Destabilizing | 0.117 | N | 0.373 | neutral | N | 0.440252879 | None | None | N |
R/H | 0.134 | likely_benign | 0.1413 | benign | -1.358 | Destabilizing | 0.38 | N | 0.31 | neutral | None | None | None | None | N |
R/I | 0.3049 | likely_benign | 0.3286 | benign | 0.376 | Stabilizing | 0.555 | D | 0.443 | neutral | None | None | None | None | N |
R/K | 0.0889 | likely_benign | 0.1 | benign | -0.55 | Destabilizing | None | N | 0.089 | neutral | N | 0.401963849 | None | None | N |
R/L | 0.266 | likely_benign | 0.2961 | benign | 0.376 | Stabilizing | 0.149 | N | 0.373 | neutral | None | None | None | None | N |
R/M | 0.2723 | likely_benign | 0.3165 | benign | -0.189 | Destabilizing | 0.484 | N | 0.365 | neutral | N | 0.426091503 | None | None | N |
R/N | 0.5664 | likely_pathogenic | 0.6199 | pathogenic | -0.292 | Destabilizing | 0.149 | N | 0.293 | neutral | None | None | None | None | N |
R/P | 0.8535 | likely_pathogenic | 0.8861 | pathogenic | 0.07 | Stabilizing | 0.555 | D | 0.416 | neutral | None | None | None | None | N |
R/Q | 0.1021 | likely_benign | 0.1112 | benign | -0.255 | Destabilizing | 0.002 | N | 0.253 | neutral | None | None | None | None | N |
R/S | 0.4773 | ambiguous | 0.5502 | ambiguous | -0.901 | Destabilizing | 0.062 | N | 0.317 | neutral | N | 0.403059927 | None | None | N |
R/T | 0.2424 | likely_benign | 0.2822 | benign | -0.524 | Destabilizing | 0.117 | N | 0.335 | neutral | N | 0.391778567 | None | None | N |
R/V | 0.3603 | ambiguous | 0.3839 | ambiguous | 0.07 | Stabilizing | 0.149 | N | 0.449 | neutral | None | None | None | None | N |
R/W | 0.2443 | likely_benign | 0.2859 | benign | 0.151 | Stabilizing | 0.915 | D | 0.471 | neutral | N | 0.483158294 | None | None | N |
R/Y | 0.4882 | ambiguous | 0.5248 | ambiguous | 0.408 | Stabilizing | 0.555 | D | 0.401 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.