Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18563 | 55912;55913;55914 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
N2AB | 16922 | 50989;50990;50991 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
N2A | 15995 | 48208;48209;48210 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
N2B | 9498 | 28717;28718;28719 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
Novex-1 | 9623 | 29092;29093;29094 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
Novex-2 | 9690 | 29293;29294;29295 | chr2:178601310;178601309;178601308 | chr2:179466037;179466036;179466035 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | rs1188505019 | None | 0.709 | N | 0.724 | 0.284 | 0.615969100344 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
P/L | rs1188505019 | None | 0.709 | N | 0.724 | 0.284 | 0.615969100344 | gnomAD-4.0.0 | 3.12233E-06 | None | None | None | None | N | None | 4.02145E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.23144E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0794 | likely_benign | 0.0717 | benign | -1.265 | Destabilizing | 0.004 | N | 0.361 | neutral | N | 0.511094256 | None | None | N |
P/C | 0.4925 | ambiguous | 0.4177 | ambiguous | -0.738 | Destabilizing | 0.98 | D | 0.801 | deleterious | None | None | None | None | N |
P/D | 0.3456 | ambiguous | 0.3269 | benign | -1.245 | Destabilizing | 0.866 | D | 0.749 | deleterious | None | None | None | None | N |
P/E | 0.2056 | likely_benign | 0.193 | benign | -1.314 | Destabilizing | 0.866 | D | 0.699 | prob.neutral | None | None | None | None | N |
P/F | 0.4412 | ambiguous | 0.3669 | ambiguous | -1.131 | Destabilizing | 0.98 | D | 0.803 | deleterious | None | None | None | None | N |
P/G | 0.3229 | likely_benign | 0.2876 | benign | -1.497 | Destabilizing | 0.48 | N | 0.664 | neutral | None | None | None | None | N |
P/H | 0.2459 | likely_benign | 0.213 | benign | -1.001 | Destabilizing | 0.993 | D | 0.785 | deleterious | None | None | None | None | N |
P/I | 0.2101 | likely_benign | 0.1969 | benign | -0.757 | Destabilizing | 0.866 | D | 0.788 | deleterious | None | None | None | None | N |
P/K | 0.2406 | likely_benign | 0.237 | benign | -1.115 | Destabilizing | 0.866 | D | 0.701 | prob.neutral | None | None | None | None | N |
P/L | 0.1051 | likely_benign | 0.0914 | benign | -0.757 | Destabilizing | 0.709 | D | 0.724 | prob.delet. | N | 0.519849813 | None | None | N |
P/M | 0.2232 | likely_benign | 0.2133 | benign | -0.521 | Destabilizing | 0.98 | D | 0.787 | deleterious | None | None | None | None | N |
P/N | 0.2656 | likely_benign | 0.2498 | benign | -0.787 | Destabilizing | 0.929 | D | 0.791 | deleterious | None | None | None | None | N |
P/Q | 0.1405 | likely_benign | 0.1383 | benign | -1.067 | Destabilizing | 0.908 | D | 0.785 | deleterious | N | 0.510190179 | None | None | N |
P/R | 0.2463 | likely_benign | 0.2165 | benign | -0.457 | Destabilizing | 0.83 | D | 0.781 | deleterious | N | 0.515481356 | None | None | N |
P/S | 0.1322 | likely_benign | 0.1135 | benign | -1.175 | Destabilizing | 0.41 | N | 0.666 | neutral | N | 0.476639158 | None | None | N |
P/T | 0.1167 | likely_benign | 0.11 | benign | -1.155 | Destabilizing | 0.709 | D | 0.706 | prob.neutral | D | 0.523639479 | None | None | N |
P/V | 0.1449 | likely_benign | 0.139 | benign | -0.892 | Destabilizing | 0.764 | D | 0.7 | prob.neutral | None | None | None | None | N |
P/W | 0.7131 | likely_pathogenic | 0.6368 | pathogenic | -1.233 | Destabilizing | 0.993 | D | 0.789 | deleterious | None | None | None | None | N |
P/Y | 0.4419 | ambiguous | 0.3739 | ambiguous | -0.992 | Destabilizing | 0.98 | D | 0.802 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.