Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18637 | 56134;56135;56136 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
N2AB | 16996 | 51211;51212;51213 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
N2A | 16069 | 48430;48431;48432 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
N2B | 9572 | 28939;28940;28941 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
Novex-1 | 9697 | 29314;29315;29316 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
Novex-2 | 9764 | 29515;29516;29517 | chr2:178600995;178600994;178600993 | chr2:179465722;179465721;179465720 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs374151130 | 0.022 | 1.0 | N | 0.775 | 0.398 | None | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/C | rs374151130 | 0.022 | 1.0 | N | 0.775 | 0.398 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs374151130 | 0.022 | 1.0 | N | 0.775 | 0.398 | None | gnomAD-4.0.0 | 5.14614E-05 | None | None | None | None | I | None | 1.33661E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 6.86819E-05 | 0 | 1.60174E-05 |
R/H | rs758627195 | -0.615 | 1.0 | N | 0.779 | 0.386 | None | gnomAD-2.1.1 | 1.61E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 9.81E-05 | None | 0 | 8.94E-06 | 0 |
R/H | rs758627195 | -0.615 | 1.0 | N | 0.779 | 0.386 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 4.1425E-04 | 0 |
R/H | rs758627195 | -0.615 | 1.0 | N | 0.779 | 0.386 | None | gnomAD-4.0.0 | 1.79789E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.54367E-06 | 2.74593E-04 | 1.60164E-05 |
R/L | rs758627195 | None | 1.0 | N | 0.633 | 0.46 | 0.45553875121 | gnomAD-4.0.0 | 6.84463E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99742E-07 | 0 | 0 |
R/S | rs374151130 | 0.129 | 1.0 | N | 0.69 | 0.404 | None | gnomAD-2.1.1 | 3.23E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 7.15E-05 | 0 |
R/S | rs374151130 | 0.129 | 1.0 | N | 0.69 | 0.404 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/S | rs374151130 | 0.129 | 1.0 | N | 0.69 | 0.404 | None | gnomAD-4.0.0 | 1.48804E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.03502E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6405 | likely_pathogenic | 0.7046 | pathogenic | 0.079 | Stabilizing | 0.999 | D | 0.634 | neutral | None | None | None | None | I |
R/C | 0.4552 | ambiguous | 0.4648 | ambiguous | -0.153 | Destabilizing | 1.0 | D | 0.775 | deleterious | N | 0.474002131 | None | None | I |
R/D | 0.7706 | likely_pathogenic | 0.8149 | pathogenic | -0.312 | Destabilizing | 1.0 | D | 0.715 | prob.delet. | None | None | None | None | I |
R/E | 0.5161 | ambiguous | 0.542 | ambiguous | -0.275 | Destabilizing | 0.999 | D | 0.654 | neutral | None | None | None | None | I |
R/F | 0.7862 | likely_pathogenic | 0.8033 | pathogenic | -0.24 | Destabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | I |
R/G | 0.4265 | ambiguous | 0.5047 | ambiguous | -0.054 | Destabilizing | 1.0 | D | 0.633 | neutral | N | 0.454083394 | None | None | I |
R/H | 0.2171 | likely_benign | 0.2124 | benign | -0.587 | Destabilizing | 1.0 | D | 0.779 | deleterious | N | 0.487811965 | None | None | I |
R/I | 0.5256 | ambiguous | 0.5573 | ambiguous | 0.383 | Stabilizing | 1.0 | D | 0.749 | deleterious | None | None | None | None | I |
R/K | 0.1723 | likely_benign | 0.178 | benign | -0.092 | Destabilizing | 0.998 | D | 0.558 | neutral | None | None | None | None | I |
R/L | 0.5057 | ambiguous | 0.536 | ambiguous | 0.383 | Stabilizing | 1.0 | D | 0.633 | neutral | N | 0.475882818 | None | None | I |
R/M | 0.4892 | ambiguous | 0.5369 | ambiguous | -0.052 | Destabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | I |
R/N | 0.7073 | likely_pathogenic | 0.779 | pathogenic | 0.026 | Stabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | I |
R/P | 0.8864 | likely_pathogenic | 0.9255 | pathogenic | 0.299 | Stabilizing | 1.0 | D | 0.704 | prob.neutral | N | 0.483651365 | None | None | I |
R/Q | 0.2036 | likely_benign | 0.2007 | benign | -0.014 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | I |
R/S | 0.7191 | likely_pathogenic | 0.7817 | pathogenic | -0.123 | Destabilizing | 1.0 | D | 0.69 | prob.neutral | N | 0.456678195 | None | None | I |
R/T | 0.4637 | ambiguous | 0.5198 | ambiguous | 0.014 | Stabilizing | 1.0 | D | 0.687 | prob.neutral | None | None | None | None | I |
R/V | 0.6163 | likely_pathogenic | 0.6385 | pathogenic | 0.299 | Stabilizing | 1.0 | D | 0.726 | prob.delet. | None | None | None | None | I |
R/W | 0.3312 | likely_benign | 0.3472 | ambiguous | -0.44 | Destabilizing | 1.0 | D | 0.788 | deleterious | None | None | None | None | I |
R/Y | 0.5968 | likely_pathogenic | 0.6203 | pathogenic | -0.037 | Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.