Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18701 | 56326;56327;56328 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
N2AB | 17060 | 51403;51404;51405 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
N2A | 16133 | 48622;48623;48624 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
N2B | 9636 | 29131;29132;29133 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
Novex-1 | 9761 | 29506;29507;29508 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
Novex-2 | 9828 | 29707;29708;29709 | chr2:178599800;178599799;178599798 | chr2:179464527;179464526;179464525 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/D | rs1001238 | 0.171 | None | N | 0.1 | 0.162 | None | gnomAD-2.1.1 | 3.54674E-01 | None | None | None | None | N | None | 5.41211E-01 | 4.31485E-01 | None | 2.88348E-01 | 7.1154E-01 | None | 5.22932E-01 | None | 2.77491E-01 | 2.27833E-01 | 3.10017E-01 |
N/D | rs1001238 | 0.171 | None | N | 0.1 | 0.162 | None | gnomAD-3.1.2 | 3.631E-01 | None | None | None | None | N | None | 5.40248E-01 | 3.87211E-01 | 5.59341E-01 | 2.90611E-01 | 7.08757E-01 | None | 2.87323E-01 | 2.81646E-01 | 2.27012E-01 | 5.20747E-01 | 3.30932E-01 |
N/D | rs1001238 | 0.171 | None | N | 0.1 | 0.162 | None | 1000 genomes | 5.1278E-01 | None | None | None | None | N | None | 5.688E-01 | 4.078E-01 | None | None | 7.252E-01 | 2.535E-01 | None | None | None | 5.593E-01 | None |
N/D | rs1001238 | 0.171 | None | N | 0.1 | 0.162 | None | gnomAD-4.0.0 | 2.78915E-01 | None | None | None | None | N | None | 5.4686E-01 | 4.18557E-01 | None | 2.88409E-01 | 7.02305E-01 | None | 2.80055E-01 | 3.15589E-01 | 2.19149E-01 | 5.10058E-01 | 3.06389E-01 |
N/I | None | None | 0.006 | N | 0.33 | 0.203 | 0.377976839388 | gnomAD-4.0.0 | 6.86502E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.66279E-05 |
N/S | rs917862808 | None | None | N | 0.165 | 0.2 | 0.0611884634855 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
N/S | rs917862808 | None | None | N | 0.165 | 0.2 | 0.0611884634855 | gnomAD-4.0.0 | 1.24324E-06 | None | None | None | None | N | None | 0 | 1.68885E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.60694E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.1456 | likely_benign | 0.1374 | benign | -0.435 | Destabilizing | 0.001 | N | 0.196 | neutral | None | None | None | None | N |
N/C | 0.2887 | likely_benign | 0.2954 | benign | 0.378 | Stabilizing | 0.316 | N | 0.461 | neutral | None | None | None | None | N |
N/D | 0.0583 | likely_benign | 0.0524 | benign | -0.324 | Destabilizing | None | N | 0.1 | neutral | N | 0.380747923 | None | None | N |
N/E | 0.1998 | likely_benign | 0.1843 | benign | -0.332 | Destabilizing | None | N | 0.106 | neutral | None | None | None | None | N |
N/F | 0.5053 | ambiguous | 0.4818 | ambiguous | -0.675 | Destabilizing | 0.051 | N | 0.357 | neutral | None | None | None | None | N |
N/G | 0.2435 | likely_benign | 0.2113 | benign | -0.659 | Destabilizing | None | N | 0.155 | neutral | None | None | None | None | N |
N/H | 0.1429 | likely_benign | 0.1452 | benign | -0.745 | Destabilizing | 0.013 | N | 0.283 | neutral | N | 0.479874767 | None | None | N |
N/I | 0.2136 | likely_benign | 0.2235 | benign | 0.081 | Stabilizing | 0.006 | N | 0.33 | neutral | N | 0.506271935 | None | None | N |
N/K | 0.2852 | likely_benign | 0.2939 | benign | -0.013 | Destabilizing | 0.001 | N | 0.186 | neutral | N | 0.451456015 | None | None | N |
N/L | 0.2478 | likely_benign | 0.2502 | benign | 0.081 | Stabilizing | 0.002 | N | 0.335 | neutral | None | None | None | None | N |
N/M | 0.3485 | ambiguous | 0.3406 | ambiguous | 0.651 | Stabilizing | 0.116 | N | 0.45 | neutral | None | None | None | None | N |
N/P | 0.3538 | ambiguous | 0.3492 | ambiguous | -0.063 | Destabilizing | 0.003 | N | 0.283 | neutral | None | None | None | None | N |
N/Q | 0.2893 | likely_benign | 0.2768 | benign | -0.588 | Destabilizing | 0.002 | N | 0.201 | neutral | None | None | None | None | N |
N/R | 0.3191 | likely_benign | 0.3183 | benign | 0.05 | Stabilizing | 0.002 | N | 0.235 | neutral | None | None | None | None | N |
N/S | 0.0784 | likely_benign | 0.075 | benign | -0.313 | Destabilizing | None | N | 0.165 | neutral | N | 0.390655485 | None | None | N |
N/T | 0.1128 | likely_benign | 0.1127 | benign | -0.17 | Destabilizing | 0.001 | N | 0.183 | neutral | N | 0.402949992 | None | None | N |
N/V | 0.1756 | likely_benign | 0.1735 | benign | -0.063 | Destabilizing | 0.003 | N | 0.318 | neutral | None | None | None | None | N |
N/W | 0.7646 | likely_pathogenic | 0.7417 | pathogenic | -0.588 | Destabilizing | 0.316 | N | 0.375 | neutral | None | None | None | None | N |
N/Y | 0.1637 | likely_benign | 0.1683 | benign | -0.338 | Destabilizing | 0.039 | N | 0.347 | neutral | N | 0.498903245 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.