Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18755 | 56488;56489;56490 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
N2AB | 17114 | 51565;51566;51567 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
N2A | 16187 | 48784;48785;48786 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
N2B | 9690 | 29293;29294;29295 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
Novex-1 | 9815 | 29668;29669;29670 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
Novex-2 | 9882 | 29869;29870;29871 | chr2:178599638;178599637;178599636 | chr2:179464365;179464364;179464363 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs143659933 | -0.452 | 0.173 | N | 0.351 | 0.237 | None | gnomAD-2.1.1 | 4.3E-05 | None | None | None | None | N | None | 4.14E-05 | 5.68E-05 | None | 0 | 5.15E-05 | None | 3.28E-05 | None | 0 | 5.49E-05 | 0 |
R/C | rs143659933 | -0.452 | 0.173 | N | 0.351 | 0.237 | None | gnomAD-3.1.2 | 3.95E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 3.88048E-04 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/C | rs143659933 | -0.452 | 0.173 | N | 0.351 | 0.237 | None | gnomAD-4.0.0 | 1.79829E-05 | None | None | None | None | N | None | 2.66873E-05 | 3.33712E-05 | None | 0 | 4.46688E-05 | None | 0 | 0 | 1.61123E-05 | 0 | 6.40718E-05 |
R/H | rs772767570 | -1.173 | 0.995 | N | 0.407 | 0.259 | 0.310458034454 | gnomAD-2.1.1 | 1.62E-05 | None | None | None | None | N | None | 1.29534E-04 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 8.92E-06 | 0 |
R/H | rs772767570 | -1.173 | 0.995 | N | 0.407 | 0.259 | 0.310458034454 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs772767570 | -1.173 | 0.995 | N | 0.407 | 0.259 | 0.310458034454 | gnomAD-4.0.0 | 6.82281E-06 | None | None | None | None | N | None | 5.34645E-05 | 0 | None | 0 | 2.23214E-05 | None | 0 | 0 | 1.69625E-06 | 4.40529E-05 | 0 |
R/L | rs772767570 | None | 0.929 | N | 0.363 | 0.317 | 0.48461828368 | gnomAD-4.0.0 | 6.84819E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.00001E-07 | 0 | 0 |
R/S | rs143659933 | -0.528 | 0.336 | N | 0.183 | 0.238 | 0.26547132957 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
R/S | rs143659933 | -0.528 | 0.336 | N | 0.183 | 0.238 | 0.26547132957 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.94024E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/S | rs143659933 | -0.528 | 0.336 | N | 0.183 | 0.238 | 0.26547132957 | gnomAD-4.0.0 | 6.5741E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.94477E-04 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2766 | likely_benign | 0.2707 | benign | -0.36 | Destabilizing | 0.584 | D | 0.371 | neutral | None | None | None | None | N |
R/C | 0.1125 | likely_benign | 0.1166 | benign | -0.156 | Destabilizing | 0.173 | N | 0.351 | neutral | N | 0.469952215 | None | None | N |
R/D | 0.4915 | ambiguous | 0.4906 | ambiguous | 0.052 | Stabilizing | 0.872 | D | 0.374 | neutral | None | None | None | None | N |
R/E | 0.2365 | likely_benign | 0.2448 | benign | 0.158 | Stabilizing | 0.584 | D | 0.331 | neutral | None | None | None | None | N |
R/F | 0.3918 | ambiguous | 0.3783 | ambiguous | -0.308 | Destabilizing | 0.993 | D | 0.355 | neutral | None | None | None | None | N |
R/G | 0.162 | likely_benign | 0.1693 | benign | -0.652 | Destabilizing | 0.843 | D | 0.361 | neutral | N | 0.470066858 | None | None | N |
R/H | 0.0832 | likely_benign | 0.0873 | benign | -1.178 | Destabilizing | 0.995 | D | 0.407 | neutral | N | 0.48091857 | None | None | N |
R/I | 0.1816 | likely_benign | 0.1785 | benign | 0.408 | Stabilizing | 0.98 | D | 0.363 | neutral | None | None | None | None | N |
R/K | 0.0696 | likely_benign | 0.0739 | benign | -0.334 | Destabilizing | 0.037 | N | 0.176 | neutral | None | None | None | None | N |
R/L | 0.1676 | likely_benign | 0.1656 | benign | 0.408 | Stabilizing | 0.929 | D | 0.363 | neutral | N | 0.468354705 | None | None | N |
R/M | 0.1852 | likely_benign | 0.183 | benign | 0.092 | Stabilizing | 0.993 | D | 0.378 | neutral | None | None | None | None | N |
R/N | 0.3506 | ambiguous | 0.352 | ambiguous | 0.195 | Stabilizing | 0.872 | D | 0.306 | neutral | None | None | None | None | N |
R/P | 0.8147 | likely_pathogenic | 0.797 | pathogenic | 0.174 | Stabilizing | 0.989 | D | 0.364 | neutral | N | 0.495772095 | None | None | N |
R/Q | 0.0776 | likely_benign | 0.0802 | benign | 0.042 | Stabilizing | 0.209 | N | 0.235 | neutral | None | None | None | None | N |
R/S | 0.2813 | likely_benign | 0.2799 | benign | -0.403 | Destabilizing | 0.336 | N | 0.183 | neutral | N | 0.441821464 | None | None | N |
R/T | 0.1393 | likely_benign | 0.1419 | benign | -0.126 | Destabilizing | 0.773 | D | 0.357 | neutral | None | None | None | None | N |
R/V | 0.2243 | likely_benign | 0.2178 | benign | 0.174 | Stabilizing | 0.872 | D | 0.39 | neutral | None | None | None | None | N |
R/W | 0.1754 | likely_benign | 0.1776 | benign | -0.117 | Destabilizing | 0.998 | D | 0.367 | neutral | None | None | None | None | N |
R/Y | 0.3132 | likely_benign | 0.3126 | benign | 0.224 | Stabilizing | 0.993 | D | 0.355 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.