Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18898 | 56917;56918;56919 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
N2AB | 17257 | 51994;51995;51996 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
N2A | 16330 | 49213;49214;49215 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
N2B | 9833 | 29722;29723;29724 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
Novex-1 | 9958 | 30097;30098;30099 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
Novex-2 | 10025 | 30298;30299;30300 | chr2:178599018;178599017;178599016 | chr2:179463745;179463744;179463743 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs893885472 | -0.71 | 0.999 | N | 0.48 | 0.348 | 0.574775486166 | gnomAD-2.1.1 | 1.12E-05 | None | None | None | None | N | None | 4.22E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.16E-06 | 1.48192E-04 |
R/C | rs893885472 | -0.71 | 0.999 | N | 0.48 | 0.348 | 0.574775486166 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs893885472 | -0.71 | 0.999 | N | 0.48 | 0.348 | 0.574775486166 | gnomAD-4.0.0 | 6.88541E-06 | None | None | None | None | N | None | 1.34742E-05 | 1.72408E-05 | None | 0 | 2.25887E-05 | None | 0 | 0 | 5.12297E-06 | 1.12651E-05 | 1.61996E-05 |
R/G | None | None | 0.485 | N | 0.451 | 0.234 | 0.364926071151 | gnomAD-4.0.0 | 6.91713E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 1.75747E-04 | 0 | 0 | 0 |
R/H | rs572453785 | -1.262 | 0.031 | N | 0.203 | 0.104 | None | gnomAD-2.1.1 | 5.22E-05 | None | None | None | None | N | None | 1.68535E-04 | 3.02E-05 | None | 0 | 1.0591E-04 | None | 6.99E-05 | None | 0 | 4.07E-05 | 0 |
R/H | rs572453785 | -1.262 | 0.031 | N | 0.203 | 0.104 | None | gnomAD-3.1.2 | 1.11922E-04 | None | None | None | None | N | None | 2.65855E-04 | 6.56E-05 | 0 | 0 | 1.94628E-04 | None | 0 | 0 | 4.42E-05 | 2.07727E-04 | 0 |
R/H | rs572453785 | -1.262 | 0.031 | N | 0.203 | 0.104 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs572453785 | -1.262 | 0.031 | N | 0.203 | 0.104 | None | gnomAD-4.0.0 | 8.25614E-05 | None | None | None | None | N | None | 2.68918E-04 | 5.14845E-05 | None | 0 | 6.77629E-05 | None | 0 | 1.67001E-04 | 7.42506E-05 | 8.99726E-05 | 1.61818E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3728 | ambiguous | 0.3508 | ambiguous | -0.445 | Destabilizing | 0.004 | N | 0.137 | neutral | None | None | None | None | N |
R/C | 0.1593 | likely_benign | 0.1949 | benign | -0.306 | Destabilizing | 0.999 | D | 0.48 | neutral | N | 0.485118173 | None | None | N |
R/D | 0.7911 | likely_pathogenic | 0.7832 | pathogenic | -0.263 | Destabilizing | 0.704 | D | 0.484 | neutral | None | None | None | None | N |
R/E | 0.4767 | ambiguous | 0.4373 | ambiguous | -0.196 | Destabilizing | 0.704 | D | 0.214 | neutral | None | None | None | None | N |
R/F | 0.6818 | likely_pathogenic | 0.673 | pathogenic | -0.611 | Destabilizing | 0.893 | D | 0.531 | neutral | None | None | None | None | N |
R/G | 0.2609 | likely_benign | 0.2696 | benign | -0.685 | Destabilizing | 0.485 | N | 0.451 | neutral | N | 0.45329396 | None | None | N |
R/H | 0.1083 | likely_benign | 0.1163 | benign | -1.117 | Destabilizing | 0.031 | N | 0.203 | neutral | N | 0.462414875 | None | None | N |
R/I | 0.4637 | ambiguous | 0.4616 | ambiguous | 0.173 | Stabilizing | 0.543 | D | 0.533 | neutral | None | None | None | None | N |
R/K | 0.1144 | likely_benign | 0.1082 | benign | -0.527 | Destabilizing | 0.495 | N | 0.255 | neutral | None | None | None | None | N |
R/L | 0.3597 | ambiguous | 0.3609 | ambiguous | 0.173 | Stabilizing | 0.006 | N | 0.161 | neutral | N | 0.499759755 | None | None | N |
R/M | 0.3933 | ambiguous | 0.3839 | ambiguous | 0.034 | Stabilizing | 0.893 | D | 0.423 | neutral | None | None | None | None | N |
R/N | 0.6077 | likely_pathogenic | 0.5853 | pathogenic | 0.024 | Stabilizing | 0.704 | D | 0.298 | neutral | None | None | None | None | N |
R/P | 0.7285 | likely_pathogenic | 0.7395 | pathogenic | -0.013 | Destabilizing | 0.97 | D | 0.487 | neutral | N | 0.452061809 | None | None | N |
R/Q | 0.1098 | likely_benign | 0.1151 | benign | -0.235 | Destabilizing | 0.704 | D | 0.321 | neutral | None | None | None | None | N |
R/S | 0.4614 | ambiguous | 0.4427 | ambiguous | -0.534 | Destabilizing | 0.485 | N | 0.377 | neutral | N | 0.432569184 | None | None | N |
R/T | 0.4211 | ambiguous | 0.3934 | ambiguous | -0.323 | Destabilizing | 0.704 | D | 0.377 | neutral | None | None | None | None | N |
R/V | 0.5083 | ambiguous | 0.5098 | ambiguous | -0.013 | Destabilizing | 0.329 | N | 0.491 | neutral | None | None | None | None | N |
R/W | 0.2721 | likely_benign | 0.3063 | benign | -0.449 | Destabilizing | 0.995 | D | 0.486 | neutral | None | None | None | None | N |
R/Y | 0.4434 | ambiguous | 0.4438 | ambiguous | -0.086 | Destabilizing | 0.893 | D | 0.489 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.