Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1890 | 5893;5894;5895 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
N2AB | 1890 | 5893;5894;5895 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
N2A | 1890 | 5893;5894;5895 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
N2B | 1844 | 5755;5756;5757 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
Novex-1 | 1844 | 5755;5756;5757 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
Novex-2 | 1844 | 5755;5756;5757 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
Novex-3 | 1890 | 5893;5894;5895 | chr2:178776196;178776195;178776194 | chr2:179640923;179640922;179640921 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs146496197 | -0.491 | 1.0 | D | 0.487 | 0.626 | None | gnomAD-2.1.1 | 4.07244E-04 | None | None | None | None | N | None | 2.68408E-03 | 4.51671E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 2.17466E-04 | 4.15858E-04 |
R/C | rs146496197 | -0.491 | 1.0 | D | 0.487 | 0.626 | None | gnomAD-3.1.2 | 1.03209E-03 | None | None | None | None | N | None | 2.96901E-03 | 9.1683E-04 | 0 | 0 | 0 | None | 0 | 3.16456E-03 | 2.35211E-04 | 2.07469E-04 | 9.56938E-04 |
R/C | rs146496197 | -0.491 | 1.0 | D | 0.487 | 0.626 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 1.5E-03 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs146496197 | -0.491 | 1.0 | D | 0.487 | 0.626 | None | gnomAD-4.0.0 | 3.25884E-04 | None | None | None | None | N | None | 2.66581E-03 | 6.33186E-04 | None | 0 | 0 | None | 3.12451E-05 | 8.2481E-04 | 2.09325E-04 | 4.39213E-05 | 4.79954E-04 |
R/H | rs370027329 | -1.61 | 0.169 | N | 0.137 | 0.365 | None | gnomAD-2.1.1 | 1.06E-05 | None | None | None | None | N | None | 4.01E-05 | 2.82E-05 | None | 0 | 0 | None | 0 | None | 0 | 7.77E-06 | 0 |
R/H | rs370027329 | -1.61 | 0.169 | N | 0.137 | 0.365 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 2.41E-05 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs370027329 | -1.61 | 0.169 | N | 0.137 | 0.365 | None | gnomAD-4.0.0 | 7.43487E-06 | None | None | None | None | N | None | 1.33483E-05 | 1.66683E-05 | None | 0 | 4.45434E-05 | None | 0 | 0 | 5.93216E-06 | 0 | 1.60036E-05 |
R/P | rs370027329 | -0.392 | 0.998 | N | 0.467 | 0.493 | 0.497871611283 | gnomAD-2.1.1 | 3.98E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.82E-06 | 0 |
R/P | rs370027329 | -0.392 | 0.998 | N | 0.467 | 0.493 | 0.497871611283 | gnomAD-4.0.0 | 6.84068E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99302E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8868 | likely_pathogenic | 0.8718 | pathogenic | -0.757 | Destabilizing | 0.939 | D | 0.397 | neutral | None | None | None | None | N |
R/C | 0.6679 | likely_pathogenic | 0.6141 | pathogenic | -0.625 | Destabilizing | 1.0 | D | 0.487 | neutral | D | 0.554837651 | None | None | N |
R/D | 0.9581 | likely_pathogenic | 0.953 | pathogenic | 0.031 | Stabilizing | 0.884 | D | 0.447 | neutral | None | None | None | None | N |
R/E | 0.8795 | likely_pathogenic | 0.8546 | pathogenic | 0.191 | Stabilizing | 0.759 | D | 0.367 | neutral | None | None | None | None | N |
R/F | 0.9077 | likely_pathogenic | 0.8901 | pathogenic | -0.337 | Destabilizing | 0.991 | D | 0.482 | neutral | None | None | None | None | N |
R/G | 0.7985 | likely_pathogenic | 0.7807 | pathogenic | -1.111 | Destabilizing | 0.967 | D | 0.434 | neutral | N | 0.465582382 | None | None | N |
R/H | 0.3186 | likely_benign | 0.265 | benign | -1.406 | Destabilizing | 0.169 | N | 0.137 | neutral | N | 0.446157856 | None | None | N |
R/I | 0.7883 | likely_pathogenic | 0.7428 | pathogenic | 0.211 | Stabilizing | 0.997 | D | 0.487 | neutral | None | None | None | None | N |
R/K | 0.338 | likely_benign | 0.3048 | benign | -0.688 | Destabilizing | 0.759 | D | 0.394 | neutral | None | None | None | None | N |
R/L | 0.7134 | likely_pathogenic | 0.6682 | pathogenic | 0.211 | Stabilizing | 0.983 | D | 0.438 | neutral | N | 0.438780731 | None | None | N |
R/M | 0.8563 | likely_pathogenic | 0.82 | pathogenic | -0.236 | Destabilizing | 0.999 | D | 0.413 | neutral | None | None | None | None | N |
R/N | 0.9095 | likely_pathogenic | 0.8943 | pathogenic | -0.246 | Destabilizing | 0.17 | N | 0.209 | neutral | None | None | None | None | N |
R/P | 0.9814 | likely_pathogenic | 0.9837 | pathogenic | -0.091 | Destabilizing | 0.998 | D | 0.467 | neutral | N | 0.503306533 | None | None | N |
R/Q | 0.3811 | ambiguous | 0.3249 | benign | -0.297 | Destabilizing | 0.579 | D | 0.203 | neutral | None | None | None | None | N |
R/S | 0.886 | likely_pathogenic | 0.8673 | pathogenic | -0.994 | Destabilizing | 0.967 | D | 0.399 | neutral | N | 0.444515909 | None | None | N |
R/T | 0.8099 | likely_pathogenic | 0.7711 | pathogenic | -0.633 | Destabilizing | 0.939 | D | 0.404 | neutral | None | None | None | None | N |
R/V | 0.8305 | likely_pathogenic | 0.7988 | pathogenic | -0.091 | Destabilizing | 0.991 | D | 0.455 | neutral | None | None | None | None | N |
R/W | 0.6265 | likely_pathogenic | 0.5689 | pathogenic | 0.032 | Stabilizing | 0.999 | D | 0.555 | neutral | None | None | None | None | N |
R/Y | 0.8106 | likely_pathogenic | 0.7833 | pathogenic | 0.285 | Stabilizing | 0.982 | D | 0.461 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.