Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19043 | 57352;57353;57354 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
N2AB | 17402 | 52429;52430;52431 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
N2A | 16475 | 49648;49649;49650 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
N2B | 9978 | 30157;30158;30159 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
Novex-1 | 10103 | 30532;30533;30534 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
Novex-2 | 10170 | 30733;30734;30735 | chr2:178598043;178598042;178598041 | chr2:179462770;179462769;179462768 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs567967628 | -1.838 | 0.78 | N | 0.547 | 0.234 | 0.422883881359 | gnomAD-2.1.1 | 1.61E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.31216E-04 | None | 0 | 0 | 0 |
V/A | rs567967628 | -1.838 | 0.78 | N | 0.547 | 0.234 | 0.422883881359 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
V/A | rs567967628 | -1.838 | 0.78 | N | 0.547 | 0.234 | 0.422883881359 | gnomAD-4.0.0 | 4.96129E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 8.79624E-05 | 0 |
V/E | None | None | 0.995 | N | 0.756 | 0.459 | 0.746793126172 | gnomAD-4.0.0 | 6.84701E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52181E-05 | None | 0 | 0 | 0 | 0 | 0 |
V/G | rs567967628 | -2.545 | 0.995 | N | 0.779 | 0.424 | 0.785639203354 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 9.84E-05 | None | 0 | 0 | 0 |
V/G | rs567967628 | -2.545 | 0.995 | N | 0.779 | 0.424 | 0.785639203354 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
V/G | rs567967628 | -2.545 | 0.995 | N | 0.779 | 0.424 | 0.785639203354 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
V/G | rs567967628 | -2.545 | 0.995 | N | 0.779 | 0.424 | 0.785639203354 | gnomAD-4.0.0 | 5.58104E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 8.79662E-05 | 1.60154E-05 |
V/M | rs1406392460 | None | 0.968 | N | 0.667 | 0.265 | 0.351614576976 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 2.41E-05 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/M | rs1406392460 | None | 0.968 | N | 0.667 | 0.265 | 0.351614576976 | gnomAD-4.0.0 | 3.0451E-06 | None | None | None | None | N | None | 3.49455E-05 | 6.1546E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.4557 | ambiguous | 0.4742 | ambiguous | -1.662 | Destabilizing | 0.78 | D | 0.547 | neutral | N | 0.468036913 | None | None | N |
V/C | 0.7985 | likely_pathogenic | 0.7743 | pathogenic | -1.053 | Destabilizing | 0.999 | D | 0.683 | prob.neutral | None | None | None | None | N |
V/D | 0.8592 | likely_pathogenic | 0.8568 | pathogenic | -1.841 | Destabilizing | 0.996 | D | 0.809 | deleterious | None | None | None | None | N |
V/E | 0.7149 | likely_pathogenic | 0.7231 | pathogenic | -1.664 | Destabilizing | 0.995 | D | 0.756 | deleterious | N | 0.510019608 | None | None | N |
V/F | 0.3387 | likely_benign | 0.3368 | benign | -0.957 | Destabilizing | 0.976 | D | 0.719 | prob.delet. | None | None | None | None | N |
V/G | 0.5004 | ambiguous | 0.5076 | ambiguous | -2.156 | Highly Destabilizing | 0.995 | D | 0.779 | deleterious | N | 0.474522955 | None | None | N |
V/H | 0.8899 | likely_pathogenic | 0.8929 | pathogenic | -1.847 | Destabilizing | 0.999 | D | 0.789 | deleterious | None | None | None | None | N |
V/I | 0.0774 | likely_benign | 0.0767 | benign | -0.318 | Destabilizing | 0.015 | N | 0.242 | neutral | None | None | None | None | N |
V/K | 0.8357 | likely_pathogenic | 0.8505 | pathogenic | -1.32 | Destabilizing | 0.988 | D | 0.76 | deleterious | None | None | None | None | N |
V/L | 0.3036 | likely_benign | 0.284 | benign | -0.318 | Destabilizing | 0.437 | N | 0.413 | neutral | N | 0.454336897 | None | None | N |
V/M | 0.2661 | likely_benign | 0.2723 | benign | -0.297 | Destabilizing | 0.968 | D | 0.667 | neutral | N | 0.504325787 | None | None | N |
V/N | 0.6739 | likely_pathogenic | 0.6914 | pathogenic | -1.48 | Destabilizing | 0.996 | D | 0.807 | deleterious | None | None | None | None | N |
V/P | 0.9293 | likely_pathogenic | 0.9214 | pathogenic | -0.736 | Destabilizing | 0.996 | D | 0.734 | prob.delet. | None | None | None | None | N |
V/Q | 0.707 | likely_pathogenic | 0.7274 | pathogenic | -1.382 | Destabilizing | 0.996 | D | 0.739 | prob.delet. | None | None | None | None | N |
V/R | 0.8095 | likely_pathogenic | 0.8239 | pathogenic | -1.141 | Destabilizing | 0.996 | D | 0.804 | deleterious | None | None | None | None | N |
V/S | 0.6006 | likely_pathogenic | 0.6111 | pathogenic | -2.104 | Highly Destabilizing | 0.988 | D | 0.721 | prob.delet. | None | None | None | None | N |
V/T | 0.4651 | ambiguous | 0.4911 | ambiguous | -1.785 | Destabilizing | 0.919 | D | 0.619 | neutral | None | None | None | None | N |
V/W | 0.9172 | likely_pathogenic | 0.9186 | pathogenic | -1.41 | Destabilizing | 0.999 | D | 0.739 | prob.delet. | None | None | None | None | N |
V/Y | 0.7674 | likely_pathogenic | 0.7642 | pathogenic | -0.985 | Destabilizing | 0.996 | D | 0.726 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.