Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19203 | 57832;57833;57834 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
N2AB | 17562 | 52909;52910;52911 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
N2A | 16635 | 50128;50129;50130 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
N2B | 10138 | 30637;30638;30639 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
Novex-1 | 10263 | 31012;31013;31014 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
Novex-2 | 10330 | 31213;31214;31215 | chr2:178595747;178595746;178595745 | chr2:179460474;179460473;179460472 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs1170083550 | -1.285 | 0.999 | N | 0.561 | 0.322 | 0.452928561435 | gnomAD-2.1.1 | 4.13E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.13E-06 | 0 |
L/V | rs1170083550 | -1.285 | 0.999 | N | 0.561 | 0.322 | 0.452928561435 | gnomAD-4.0.0 | 1.60188E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.87208E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9628 | likely_pathogenic | 0.9726 | pathogenic | -2.497 | Highly Destabilizing | 0.999 | D | 0.717 | prob.delet. | None | None | None | None | N |
L/C | 0.9425 | likely_pathogenic | 0.9583 | pathogenic | -1.85 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
L/D | 0.9995 | likely_pathogenic | 0.9996 | pathogenic | -3.384 | Highly Destabilizing | 1.0 | D | 0.911 | deleterious | None | None | None | None | N |
L/E | 0.997 | likely_pathogenic | 0.9979 | pathogenic | -3.075 | Highly Destabilizing | 1.0 | D | 0.893 | deleterious | None | None | None | None | N |
L/F | 0.599 | likely_pathogenic | 0.6796 | pathogenic | -1.452 | Destabilizing | 1.0 | D | 0.711 | prob.delet. | None | None | None | None | N |
L/G | 0.9938 | likely_pathogenic | 0.9956 | pathogenic | -3.081 | Highly Destabilizing | 1.0 | D | 0.885 | deleterious | None | None | None | None | N |
L/H | 0.9931 | likely_pathogenic | 0.9955 | pathogenic | -2.912 | Highly Destabilizing | 1.0 | D | 0.883 | deleterious | None | None | None | None | N |
L/I | 0.1319 | likely_benign | 0.1527 | benign | -0.737 | Destabilizing | 0.999 | D | 0.556 | neutral | None | None | None | None | N |
L/K | 0.9949 | likely_pathogenic | 0.9965 | pathogenic | -1.88 | Destabilizing | 1.0 | D | 0.881 | deleterious | None | None | None | None | N |
L/M | 0.2734 | likely_benign | 0.3229 | benign | -0.997 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | N | 0.500425996 | None | None | N |
L/N | 0.997 | likely_pathogenic | 0.9978 | pathogenic | -2.572 | Highly Destabilizing | 1.0 | D | 0.913 | deleterious | None | None | None | None | N |
L/P | 0.9969 | likely_pathogenic | 0.998 | pathogenic | -1.315 | Destabilizing | 1.0 | D | 0.913 | deleterious | D | 0.542510309 | None | None | N |
L/Q | 0.9899 | likely_pathogenic | 0.9933 | pathogenic | -2.233 | Highly Destabilizing | 1.0 | D | 0.911 | deleterious | D | 0.542510309 | None | None | N |
L/R | 0.9914 | likely_pathogenic | 0.9941 | pathogenic | -1.978 | Destabilizing | 1.0 | D | 0.892 | deleterious | D | 0.542510309 | None | None | N |
L/S | 0.9963 | likely_pathogenic | 0.9977 | pathogenic | -3.078 | Highly Destabilizing | 1.0 | D | 0.882 | deleterious | None | None | None | None | N |
L/T | 0.98 | likely_pathogenic | 0.9856 | pathogenic | -2.613 | Highly Destabilizing | 1.0 | D | 0.799 | deleterious | None | None | None | None | N |
L/V | 0.2128 | likely_benign | 0.2467 | benign | -1.315 | Destabilizing | 0.999 | D | 0.561 | neutral | N | 0.515019996 | None | None | N |
L/W | 0.963 | likely_pathogenic | 0.9789 | pathogenic | -1.949 | Destabilizing | 1.0 | D | 0.859 | deleterious | None | None | None | None | N |
L/Y | 0.9599 | likely_pathogenic | 0.9754 | pathogenic | -1.704 | Destabilizing | 1.0 | D | 0.815 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.