Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19437 | 58534;58535;58536 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
N2AB | 17796 | 53611;53612;53613 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
N2A | 16869 | 50830;50831;50832 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
N2B | 10372 | 31339;31340;31341 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
Novex-1 | 10497 | 31714;31715;31716 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
Novex-2 | 10564 | 31915;31916;31917 | chr2:178594084;178594083;178594082 | chr2:179458811;179458810;179458809 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs778067188 | -0.481 | 0.349 | N | 0.555 | 0.206 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.35E-05 | 0 |
T/A | rs778067188 | -0.481 | 0.349 | N | 0.555 | 0.206 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
T/A | rs778067188 | -0.481 | 0.349 | N | 0.555 | 0.206 | None | gnomAD-4.0.0 | 3.71902E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.00148E-05 | 0 | 1.60143E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0904 | likely_benign | 0.0925 | benign | -0.643 | Destabilizing | 0.349 | N | 0.555 | neutral | N | 0.488439188 | None | None | N |
T/C | 0.4036 | ambiguous | 0.362 | ambiguous | -0.37 | Destabilizing | 0.996 | D | 0.681 | prob.neutral | None | None | None | None | N |
T/D | 0.3111 | likely_benign | 0.361 | ambiguous | 0.345 | Stabilizing | 0.923 | D | 0.647 | neutral | None | None | None | None | N |
T/E | 0.244 | likely_benign | 0.2677 | benign | 0.339 | Stabilizing | 0.923 | D | 0.649 | neutral | None | None | None | None | N |
T/F | 0.239 | likely_benign | 0.2222 | benign | -0.831 | Destabilizing | 0.923 | D | 0.755 | deleterious | None | None | None | None | N |
T/G | 0.2867 | likely_benign | 0.2836 | benign | -0.879 | Destabilizing | 0.633 | D | 0.697 | prob.neutral | None | None | None | None | N |
T/H | 0.2592 | likely_benign | 0.2588 | benign | -1.153 | Destabilizing | 0.996 | D | 0.761 | deleterious | None | None | None | None | N |
T/I | 0.1443 | likely_benign | 0.1263 | benign | -0.117 | Destabilizing | 0.018 | N | 0.415 | neutral | N | 0.516492581 | None | None | N |
T/K | 0.2348 | likely_benign | 0.2495 | benign | -0.41 | Destabilizing | 0.923 | D | 0.649 | neutral | None | None | None | None | N |
T/L | 0.0989 | likely_benign | 0.0945 | benign | -0.117 | Destabilizing | 0.372 | N | 0.607 | neutral | None | None | None | None | N |
T/M | 0.0874 | likely_benign | 0.0808 | benign | 0.019 | Stabilizing | 0.979 | D | 0.676 | prob.neutral | None | None | None | None | N |
T/N | 0.0976 | likely_benign | 0.1056 | benign | -0.331 | Destabilizing | 0.901 | D | 0.63 | neutral | N | 0.446227206 | None | None | N |
T/P | 0.1954 | likely_benign | 0.2213 | benign | -0.26 | Destabilizing | 0.949 | D | 0.695 | prob.neutral | N | 0.521687757 | None | None | N |
T/Q | 0.2324 | likely_benign | 0.2339 | benign | -0.444 | Destabilizing | 0.961 | D | 0.681 | prob.neutral | None | None | None | None | N |
T/R | 0.2123 | likely_benign | 0.2235 | benign | -0.269 | Destabilizing | 0.923 | D | 0.69 | prob.neutral | None | None | None | None | N |
T/S | 0.1152 | likely_benign | 0.1134 | benign | -0.648 | Destabilizing | 0.034 | N | 0.318 | neutral | N | 0.471354937 | None | None | N |
T/V | 0.1188 | likely_benign | 0.1034 | benign | -0.26 | Destabilizing | 0.372 | N | 0.571 | neutral | None | None | None | None | N |
T/W | 0.5895 | likely_pathogenic | 0.5784 | pathogenic | -0.786 | Destabilizing | 0.996 | D | 0.759 | deleterious | None | None | None | None | N |
T/Y | 0.2355 | likely_benign | 0.2358 | benign | -0.52 | Destabilizing | 0.961 | D | 0.76 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.