Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19553 | 58882;58883;58884 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
N2AB | 17912 | 53959;53960;53961 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
N2A | 16985 | 51178;51179;51180 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
N2B | 10488 | 31687;31688;31689 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
Novex-1 | 10613 | 32062;32063;32064 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
Novex-2 | 10680 | 32263;32264;32265 | chr2:178593643;178593642;178593641 | chr2:179458370;179458369;179458368 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | None | -2.172 | 0.922 | D | 0.591 | 0.47 | None | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.94E-06 | 0 |
R/G | None | -2.172 | 0.922 | D | 0.591 | 0.47 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/G | None | -2.172 | 0.922 | D | 0.591 | 0.47 | None | gnomAD-4.0.0 | 3.10014E-06 | None | None | None | None | N | None | 1.33618E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 3.39115E-06 | 0 | 0 |
R/P | None | None | 0.988 | D | 0.68 | 0.522 | 0.614679400128 | gnomAD-4.0.0 | 3.42273E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.49817E-06 | 0 | 0 |
R/Q | rs543279513 | -1.068 | 0.447 | N | 0.475 | 0.314 | None | gnomAD-2.1.1 | 1.08E-05 | None | None | None | None | N | None | 1.24152E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/Q | rs543279513 | -1.068 | 0.447 | N | 0.475 | 0.314 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 7.24E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/Q | rs543279513 | -1.068 | 0.447 | N | 0.475 | 0.314 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 1.5E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/Q | rs543279513 | -1.068 | 0.447 | N | 0.475 | 0.314 | None | gnomAD-4.0.0 | 7.43962E-06 | None | None | None | None | N | None | 5.33305E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 5.93453E-06 | 1.09847E-05 | 0 |
R/W | rs372959465 | -0.666 | 1.0 | D | 0.729 | 0.526 | None | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 8.28E-05 | 0 | None | 0 | 5.2E-05 | None | 0 | None | 0 | 7.85E-06 | 0 |
R/W | rs372959465 | -0.666 | 1.0 | D | 0.729 | 0.526 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/W | rs372959465 | -0.666 | 1.0 | D | 0.729 | 0.526 | None | gnomAD-4.0.0 | 1.30206E-05 | None | None | None | None | N | None | 4.00855E-05 | 0 | None | 0 | 2.24024E-05 | None | 0 | 0 | 1.35646E-05 | 1.09837E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9432 | likely_pathogenic | 0.9351 | pathogenic | -1.666 | Destabilizing | 0.754 | D | 0.572 | neutral | None | None | None | None | N |
R/C | 0.4091 | ambiguous | 0.354 | ambiguous | -1.621 | Destabilizing | 0.998 | D | 0.755 | deleterious | None | None | None | None | N |
R/D | 0.9935 | likely_pathogenic | 0.9915 | pathogenic | -1.066 | Destabilizing | 0.956 | D | 0.612 | neutral | None | None | None | None | N |
R/E | 0.914 | likely_pathogenic | 0.8992 | pathogenic | -0.831 | Destabilizing | 0.754 | D | 0.606 | neutral | None | None | None | None | N |
R/F | 0.9733 | likely_pathogenic | 0.9627 | pathogenic | -0.677 | Destabilizing | 0.993 | D | 0.783 | deleterious | None | None | None | None | N |
R/G | 0.9321 | likely_pathogenic | 0.9147 | pathogenic | -2.044 | Highly Destabilizing | 0.922 | D | 0.591 | neutral | D | 0.535221565 | None | None | N |
R/H | 0.3763 | ambiguous | 0.3224 | benign | -1.712 | Destabilizing | 0.978 | D | 0.617 | neutral | None | None | None | None | N |
R/I | 0.8569 | likely_pathogenic | 0.8214 | pathogenic | -0.569 | Destabilizing | 0.978 | D | 0.767 | deleterious | None | None | None | None | N |
R/K | 0.4388 | ambiguous | 0.3786 | ambiguous | -1.122 | Destabilizing | 0.559 | D | 0.647 | neutral | None | None | None | None | N |
R/L | 0.8214 | likely_pathogenic | 0.7868 | pathogenic | -0.569 | Destabilizing | 0.922 | D | 0.591 | neutral | D | 0.524118749 | None | None | N |
R/M | 0.8886 | likely_pathogenic | 0.858 | pathogenic | -1.093 | Destabilizing | 0.994 | D | 0.653 | neutral | None | None | None | None | N |
R/N | 0.973 | likely_pathogenic | 0.9645 | pathogenic | -1.401 | Destabilizing | 0.956 | D | 0.561 | neutral | None | None | None | None | N |
R/P | 0.9983 | likely_pathogenic | 0.9982 | pathogenic | -0.923 | Destabilizing | 0.988 | D | 0.68 | prob.neutral | D | 0.547084849 | None | None | N |
R/Q | 0.3011 | likely_benign | 0.2679 | benign | -1.157 | Destabilizing | 0.447 | N | 0.475 | neutral | N | 0.502416415 | None | None | N |
R/S | 0.9562 | likely_pathogenic | 0.9444 | pathogenic | -2.15 | Highly Destabilizing | 0.754 | D | 0.559 | neutral | None | None | None | None | N |
R/T | 0.9219 | likely_pathogenic | 0.9009 | pathogenic | -1.695 | Destabilizing | 0.956 | D | 0.551 | neutral | None | None | None | None | N |
R/V | 0.888 | likely_pathogenic | 0.8592 | pathogenic | -0.923 | Destabilizing | 0.956 | D | 0.73 | prob.delet. | None | None | None | None | N |
R/W | 0.737 | likely_pathogenic | 0.6937 | pathogenic | -0.26 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | D | 0.54683136 | None | None | N |
R/Y | 0.9123 | likely_pathogenic | 0.8806 | pathogenic | -0.128 | Destabilizing | 0.978 | D | 0.72 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.