Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19698 | 59317;59318;59319 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
N2AB | 18057 | 54394;54395;54396 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
N2A | 17130 | 51613;51614;51615 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
N2B | 10633 | 32122;32123;32124 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
Novex-1 | 10758 | 32497;32498;32499 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
Novex-2 | 10825 | 32698;32699;32700 | chr2:178593027;178593026;178593025 | chr2:179457754;179457753;179457752 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | rs878974246 | None | 0.027 | N | 0.617 | 0.224 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/A | rs878974246 | None | 0.027 | N | 0.617 | 0.224 | None | gnomAD-4.0.0 | 4.9587E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 6.78187E-06 | 0 | 0 |
D/H | rs397517642 | -1.061 | 0.705 | N | 0.665 | 0.284 | 0.264081493735 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.66003E-04 |
D/H | rs397517642 | -1.061 | 0.705 | N | 0.665 | 0.284 | 0.264081493735 | gnomAD-4.0.0 | 6.84343E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65673E-05 |
D/N | None | -0.858 | 0.426 | N | 0.607 | 0.254 | 0.21279746466 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 5.6E-05 | None | 0 | None | 0 | 8.91E-06 | 0 |
D/N | None | -0.858 | 0.426 | N | 0.607 | 0.254 | 0.21279746466 | gnomAD-4.0.0 | 6.84343E-06 | None | None | None | None | N | None | 2.98954E-05 | 2.23784E-05 | None | 0 | 5.04974E-05 | None | 0 | 0 | 4.49788E-06 | 1.15958E-05 | 0 |
D/Y | rs397517642 | -0.621 | 0.879 | N | 0.72 | 0.302 | 0.298403945805 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 8.91E-06 | 0 |
D/Y | rs397517642 | -0.621 | 0.879 | N | 0.72 | 0.302 | 0.298403945805 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 4.78469E-04 |
D/Y | rs397517642 | -0.621 | 0.879 | N | 0.72 | 0.302 | 0.298403945805 | gnomAD-4.0.0 | 9.29797E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.6296E-06 | 4.3928E-05 | 3.20256E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.2965 | likely_benign | 0.2308 | benign | -0.393 | Destabilizing | 0.027 | N | 0.617 | neutral | N | 0.42697415 | None | None | N |
D/C | 0.6919 | likely_pathogenic | 0.606 | pathogenic | -0.195 | Destabilizing | 0.935 | D | 0.706 | prob.neutral | None | None | None | None | N |
D/E | 0.2694 | likely_benign | 0.2052 | benign | -0.859 | Destabilizing | None | N | 0.233 | neutral | N | 0.414967645 | None | None | N |
D/F | 0.5541 | ambiguous | 0.5137 | ambiguous | -0.483 | Destabilizing | 0.791 | D | 0.717 | prob.delet. | None | None | None | None | N |
D/G | 0.4619 | ambiguous | 0.3532 | ambiguous | -0.718 | Destabilizing | 0.117 | N | 0.623 | neutral | N | 0.466089899 | None | None | N |
D/H | 0.3702 | ambiguous | 0.3265 | benign | -0.909 | Destabilizing | 0.705 | D | 0.665 | neutral | N | 0.465396465 | None | None | N |
D/I | 0.3807 | ambiguous | 0.3123 | benign | 0.451 | Stabilizing | 0.38 | N | 0.721 | prob.delet. | None | None | None | None | N |
D/K | 0.6749 | likely_pathogenic | 0.5837 | pathogenic | -0.444 | Destabilizing | 0.081 | N | 0.635 | neutral | None | None | None | None | N |
D/L | 0.4106 | ambiguous | 0.3581 | ambiguous | 0.451 | Stabilizing | 0.149 | N | 0.698 | prob.neutral | None | None | None | None | N |
D/M | 0.6003 | likely_pathogenic | 0.5377 | ambiguous | 0.91 | Stabilizing | 0.935 | D | 0.708 | prob.delet. | None | None | None | None | N |
D/N | 0.1558 | likely_benign | 0.119 | benign | -0.703 | Destabilizing | 0.426 | N | 0.607 | neutral | N | 0.415295719 | None | None | N |
D/P | 0.9582 | likely_pathogenic | 0.9436 | pathogenic | 0.195 | Stabilizing | 0.555 | D | 0.715 | prob.delet. | None | None | None | None | N |
D/Q | 0.5182 | ambiguous | 0.4313 | ambiguous | -0.593 | Destabilizing | 0.235 | N | 0.662 | neutral | None | None | None | None | N |
D/R | 0.6903 | likely_pathogenic | 0.6185 | pathogenic | -0.467 | Destabilizing | 0.235 | N | 0.697 | prob.neutral | None | None | None | None | N |
D/S | 0.1613 | likely_benign | 0.1304 | benign | -1.001 | Destabilizing | 0.007 | N | 0.286 | neutral | None | None | None | None | N |
D/T | 0.2445 | likely_benign | 0.2063 | benign | -0.736 | Destabilizing | 0.001 | N | 0.375 | neutral | None | None | None | None | N |
D/V | 0.2658 | likely_benign | 0.2115 | benign | 0.195 | Stabilizing | 0.117 | N | 0.691 | prob.neutral | N | 0.385087455 | None | None | N |
D/W | 0.8831 | likely_pathogenic | 0.8714 | pathogenic | -0.517 | Destabilizing | 0.935 | D | 0.725 | prob.delet. | None | None | None | None | N |
D/Y | 0.2523 | likely_benign | 0.2099 | benign | -0.287 | Destabilizing | 0.879 | D | 0.72 | prob.delet. | N | 0.449216292 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.