Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19772 | 59539;59540;59541 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
N2AB | 18131 | 54616;54617;54618 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
N2A | 17204 | 51835;51836;51837 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
N2B | 10707 | 32344;32345;32346 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
Novex-1 | 10832 | 32719;32720;32721 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
Novex-2 | 10899 | 32920;32921;32922 | chr2:178592805;178592804;178592803 | chr2:179457532;179457531;179457530 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | rs72646840 | -0.027 | 0.913 | N | 0.483 | 0.195 | None | gnomAD-2.1.1 | 1.06161E-03 | None | None | None | None | I | None | 1.04967E-02 | 5.66572E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.487E-04 | 4.21467E-04 |
P/L | rs72646840 | -0.027 | 0.913 | N | 0.483 | 0.195 | None | gnomAD-3.1.2 | 3.06381E-03 | None | None | None | None | I | None | 1.03538E-02 | 8.51566E-04 | 0 | 0 | 0 | None | 0 | 0 | 2.79387E-04 | 2.07297E-04 | 1.91205E-03 |
P/L | rs72646840 | -0.027 | 0.913 | N | 0.483 | 0.195 | None | 1000 genomes | 2.39617E-03 | None | None | None | None | I | None | 7.6E-03 | 2.9E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
P/L | rs72646840 | -0.027 | 0.913 | N | 0.483 | 0.195 | None | gnomAD-4.0.0 | 6.8734E-04 | None | None | None | None | I | None | 1.07194E-02 | 6.66867E-04 | None | 0 | 0 | None | 0 | 1.6518E-04 | 1.67851E-04 | 6.58906E-05 | 9.60461E-04 |
P/Q | None | None | 0.943 | N | 0.479 | 0.166 | 0.340753184043 | gnomAD-4.0.0 | 2.05304E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.97051E-05 |
P/R | rs72646840 | None | 0.006 | N | 0.331 | 0.184 | 0.255270683199 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
P/R | rs72646840 | None | 0.006 | N | 0.331 | 0.184 | 0.255270683199 | gnomAD-4.0.0 | 6.57462E-06 | None | None | None | None | I | None | 2.41336E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
P/T | rs773420166 | -0.179 | 0.651 | N | 0.45 | 0.186 | 0.308904156042 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
P/T | rs773420166 | -0.179 | 0.651 | N | 0.45 | 0.186 | 0.308904156042 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
P/T | rs773420166 | -0.179 | 0.651 | N | 0.45 | 0.186 | 0.308904156042 | gnomAD-4.0.0 | 1.8595E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.54319E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0898 | likely_benign | 0.0872 | benign | -0.466 | Destabilizing | 0.435 | N | 0.357 | neutral | N | 0.498676746 | None | None | I |
P/C | 0.5395 | ambiguous | 0.5138 | ambiguous | -0.613 | Destabilizing | 0.995 | D | 0.548 | neutral | None | None | None | None | I |
P/D | 0.4149 | ambiguous | 0.3942 | ambiguous | -0.778 | Destabilizing | 0.712 | D | 0.463 | neutral | None | None | None | None | I |
P/E | 0.2758 | likely_benign | 0.2501 | benign | -0.893 | Destabilizing | 0.553 | D | 0.382 | neutral | None | None | None | None | I |
P/F | 0.5426 | ambiguous | 0.5309 | ambiguous | -0.768 | Destabilizing | 0.982 | D | 0.501 | neutral | None | None | None | None | I |
P/G | 0.2782 | likely_benign | 0.2808 | benign | -0.571 | Destabilizing | 0.712 | D | 0.381 | neutral | None | None | None | None | I |
P/H | 0.2154 | likely_benign | 0.2084 | benign | -0.198 | Destabilizing | 0.946 | D | 0.423 | neutral | None | None | None | None | I |
P/I | 0.3241 | likely_benign | 0.3119 | benign | -0.331 | Destabilizing | 0.946 | D | 0.587 | neutral | None | None | None | None | I |
P/K | 0.2444 | likely_benign | 0.232 | benign | -0.613 | Destabilizing | 0.003 | N | 0.154 | neutral | None | None | None | None | I |
P/L | 0.1323 | likely_benign | 0.135 | benign | -0.331 | Destabilizing | 0.913 | D | 0.483 | neutral | N | 0.45869799 | None | None | I |
P/M | 0.2847 | likely_benign | 0.2844 | benign | -0.492 | Destabilizing | 0.995 | D | 0.429 | neutral | None | None | None | None | I |
P/N | 0.2981 | likely_benign | 0.2999 | benign | -0.331 | Destabilizing | 0.897 | D | 0.474 | neutral | None | None | None | None | I |
P/Q | 0.1555 | likely_benign | 0.1499 | benign | -0.592 | Destabilizing | 0.943 | D | 0.479 | neutral | N | 0.461993353 | None | None | I |
P/R | 0.1866 | likely_benign | 0.171 | benign | -0.065 | Destabilizing | 0.006 | N | 0.331 | neutral | N | 0.490307979 | None | None | I |
P/S | 0.1253 | likely_benign | 0.1232 | benign | -0.561 | Destabilizing | 0.651 | D | 0.377 | neutral | N | 0.433779905 | None | None | I |
P/T | 0.1054 | likely_benign | 0.1031 | benign | -0.591 | Destabilizing | 0.651 | D | 0.45 | neutral | N | 0.474895809 | None | None | I |
P/V | 0.2133 | likely_benign | 0.2033 | benign | -0.345 | Destabilizing | 0.946 | D | 0.473 | neutral | None | None | None | None | I |
P/W | 0.6599 | likely_pathogenic | 0.6477 | pathogenic | -0.864 | Destabilizing | 0.995 | D | 0.596 | neutral | None | None | None | None | I |
P/Y | 0.498 | ambiguous | 0.4993 | ambiguous | -0.581 | Destabilizing | 0.982 | D | 0.524 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.