Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19996 | 60211;60212;60213 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
N2AB | 18355 | 55288;55289;55290 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
N2A | 17428 | 52507;52508;52509 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
N2B | 10931 | 33016;33017;33018 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
Novex-1 | 11056 | 33391;33392;33393 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
Novex-2 | 11123 | 33592;33593;33594 | chr2:178591833;178591832;178591831 | chr2:179456560;179456559;179456558 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/R | rs1553645358 | None | 1.0 | D | 0.871 | 0.729 | 0.874292223918 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
L/V | rs2050272980 | None | 0.999 | N | 0.592 | 0.309 | 0.499535901811 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/V | rs2050272980 | None | 0.999 | N | 0.592 | 0.309 | 0.499535901811 | gnomAD-4.0.0 | 3.84589E-06 | None | None | None | None | N | None | 1.69182E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 4.78849E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9814 | likely_pathogenic | 0.9797 | pathogenic | -2.814 | Highly Destabilizing | 0.999 | D | 0.711 | prob.delet. | None | None | None | None | N |
L/C | 0.9762 | likely_pathogenic | 0.9731 | pathogenic | -1.683 | Destabilizing | 1.0 | D | 0.806 | deleterious | None | None | None | None | N |
L/D | 0.9998 | likely_pathogenic | 0.9999 | pathogenic | -3.493 | Highly Destabilizing | 1.0 | D | 0.904 | deleterious | None | None | None | None | N |
L/E | 0.999 | likely_pathogenic | 0.9991 | pathogenic | -3.175 | Highly Destabilizing | 1.0 | D | 0.877 | deleterious | None | None | None | None | N |
L/F | 0.8314 | likely_pathogenic | 0.8342 | pathogenic | -1.729 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | N |
L/G | 0.998 | likely_pathogenic | 0.9982 | pathogenic | -3.387 | Highly Destabilizing | 1.0 | D | 0.869 | deleterious | None | None | None | None | N |
L/H | 0.9975 | likely_pathogenic | 0.9981 | pathogenic | -3.131 | Highly Destabilizing | 1.0 | D | 0.877 | deleterious | None | None | None | None | N |
L/I | 0.2619 | likely_benign | 0.21 | benign | -1.069 | Destabilizing | 0.999 | D | 0.569 | neutral | N | 0.47789706 | None | None | N |
L/K | 0.9975 | likely_pathogenic | 0.9982 | pathogenic | -2.173 | Highly Destabilizing | 1.0 | D | 0.849 | deleterious | None | None | None | None | N |
L/M | 0.5058 | ambiguous | 0.4718 | ambiguous | -1.156 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
L/N | 0.9991 | likely_pathogenic | 0.9993 | pathogenic | -2.933 | Highly Destabilizing | 1.0 | D | 0.907 | deleterious | None | None | None | None | N |
L/P | 0.9986 | likely_pathogenic | 0.9988 | pathogenic | -1.646 | Destabilizing | 1.0 | D | 0.906 | deleterious | D | 0.553208278 | None | None | N |
L/Q | 0.9968 | likely_pathogenic | 0.9973 | pathogenic | -2.552 | Highly Destabilizing | 1.0 | D | 0.897 | deleterious | D | 0.553208278 | None | None | N |
L/R | 0.9947 | likely_pathogenic | 0.996 | pathogenic | -2.273 | Highly Destabilizing | 1.0 | D | 0.871 | deleterious | D | 0.553208278 | None | None | N |
L/S | 0.9985 | likely_pathogenic | 0.9987 | pathogenic | -3.36 | Highly Destabilizing | 1.0 | D | 0.849 | deleterious | None | None | None | None | N |
L/T | 0.9896 | likely_pathogenic | 0.99 | pathogenic | -2.89 | Highly Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
L/V | 0.3723 | ambiguous | 0.2928 | benign | -1.646 | Destabilizing | 0.999 | D | 0.592 | neutral | N | 0.4999359 | None | None | N |
L/W | 0.9909 | likely_pathogenic | 0.9921 | pathogenic | -2.095 | Highly Destabilizing | 1.0 | D | 0.846 | deleterious | None | None | None | None | N |
L/Y | 0.9931 | likely_pathogenic | 0.9939 | pathogenic | -1.948 | Destabilizing | 1.0 | D | 0.795 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.