Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20009 | 60250;60251;60252 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
N2AB | 18368 | 55327;55328;55329 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
N2A | 17441 | 52546;52547;52548 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
N2B | 10944 | 33055;33056;33057 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
Novex-1 | 11069 | 33430;33431;33432 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
Novex-2 | 11136 | 33631;33632;33633 | chr2:178591794;178591793;178591792 | chr2:179456521;179456520;179456519 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/V | rs371988490 | -1.495 | 0.993 | N | 0.392 | 0.277 | None | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | I | None | 1.65344E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/V | rs371988490 | -1.495 | 0.993 | N | 0.392 | 0.277 | None | gnomAD-3.1.2 | 5.92E-05 | None | None | None | None | I | None | 2.17161E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/V | rs371988490 | -1.495 | 0.993 | N | 0.392 | 0.277 | None | gnomAD-4.0.0 | 1.66646E-05 | None | None | None | None | I | None | 1.86094E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 4.78826E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.9645 | likely_pathogenic | 0.9712 | pathogenic | -2.321 | Highly Destabilizing | 0.999 | D | 0.653 | neutral | None | None | None | None | I |
I/C | 0.9705 | likely_pathogenic | 0.9812 | pathogenic | -1.495 | Destabilizing | 1.0 | D | 0.779 | deleterious | None | None | None | None | I |
I/D | 0.9982 | likely_pathogenic | 0.9987 | pathogenic | -2.27 | Highly Destabilizing | 1.0 | D | 0.865 | deleterious | None | None | None | None | I |
I/E | 0.9929 | likely_pathogenic | 0.9942 | pathogenic | -2.186 | Highly Destabilizing | 1.0 | D | 0.857 | deleterious | None | None | None | None | I |
I/F | 0.9148 | likely_pathogenic | 0.9352 | pathogenic | -1.613 | Destabilizing | 1.0 | D | 0.828 | deleterious | N | 0.516636784 | None | None | I |
I/G | 0.9961 | likely_pathogenic | 0.997 | pathogenic | -2.747 | Highly Destabilizing | 1.0 | D | 0.855 | deleterious | None | None | None | None | I |
I/H | 0.9951 | likely_pathogenic | 0.9966 | pathogenic | -2.066 | Highly Destabilizing | 1.0 | D | 0.823 | deleterious | None | None | None | None | I |
I/K | 0.9857 | likely_pathogenic | 0.9878 | pathogenic | -1.722 | Destabilizing | 1.0 | D | 0.863 | deleterious | None | None | None | None | I |
I/L | 0.356 | ambiguous | 0.36 | ambiguous | -1.156 | Destabilizing | 0.993 | D | 0.407 | neutral | N | 0.51881245 | None | None | I |
I/M | 0.5494 | ambiguous | 0.5983 | pathogenic | -0.856 | Destabilizing | 1.0 | D | 0.801 | deleterious | D | 0.525919629 | None | None | I |
I/N | 0.9686 | likely_pathogenic | 0.9785 | pathogenic | -1.685 | Destabilizing | 1.0 | D | 0.86 | deleterious | N | 0.50636057 | None | None | I |
I/P | 0.9689 | likely_pathogenic | 0.9733 | pathogenic | -1.519 | Destabilizing | 1.0 | D | 0.86 | deleterious | None | None | None | None | I |
I/Q | 0.9891 | likely_pathogenic | 0.9914 | pathogenic | -1.784 | Destabilizing | 1.0 | D | 0.836 | deleterious | None | None | None | None | I |
I/R | 0.9798 | likely_pathogenic | 0.9835 | pathogenic | -1.153 | Destabilizing | 1.0 | D | 0.854 | deleterious | None | None | None | None | I |
I/S | 0.9792 | likely_pathogenic | 0.9851 | pathogenic | -2.334 | Highly Destabilizing | 1.0 | D | 0.852 | deleterious | N | 0.514816813 | None | None | I |
I/T | 0.9493 | likely_pathogenic | 0.9582 | pathogenic | -2.125 | Highly Destabilizing | 1.0 | D | 0.819 | deleterious | N | 0.503295924 | None | None | I |
I/V | 0.0925 | likely_benign | 0.0826 | benign | -1.519 | Destabilizing | 0.993 | D | 0.392 | neutral | N | 0.449797869 | None | None | I |
I/W | 0.9977 | likely_pathogenic | 0.9984 | pathogenic | -1.839 | Destabilizing | 1.0 | D | 0.795 | deleterious | None | None | None | None | I |
I/Y | 0.9882 | likely_pathogenic | 0.9923 | pathogenic | -1.612 | Destabilizing | 1.0 | D | 0.841 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.