Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20136 | 60631;60632;60633 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
N2AB | 18495 | 55708;55709;55710 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
N2A | 17568 | 52927;52928;52929 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
N2B | 11071 | 33436;33437;33438 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
Novex-1 | 11196 | 33811;33812;33813 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
Novex-2 | 11263 | 34012;34013;34014 | chr2:178591319;178591318;178591317 | chr2:179456046;179456045;179456044 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/H | rs1060500492 | -3.055 | 1.0 | D | 0.888 | 0.772 | 0.920432766518 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.49E-05 | 0 |
L/H | rs1060500492 | -3.055 | 1.0 | D | 0.888 | 0.772 | 0.920432766518 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
L/H | rs1060500492 | -3.055 | 1.0 | D | 0.888 | 0.772 | 0.920432766518 | gnomAD-4.0.0 | 8.97353E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.67633E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9317 | likely_pathogenic | 0.9414 | pathogenic | -2.49 | Highly Destabilizing | 0.999 | D | 0.749 | deleterious | None | None | None | None | N |
L/C | 0.8683 | likely_pathogenic | 0.8816 | pathogenic | -1.629 | Destabilizing | 1.0 | D | 0.852 | deleterious | None | None | None | None | N |
L/D | 0.9997 | likely_pathogenic | 0.9998 | pathogenic | -3.218 | Highly Destabilizing | 1.0 | D | 0.909 | deleterious | None | None | None | None | N |
L/E | 0.9978 | likely_pathogenic | 0.9986 | pathogenic | -2.892 | Highly Destabilizing | 1.0 | D | 0.889 | deleterious | None | None | None | None | N |
L/F | 0.344 | ambiguous | 0.4411 | ambiguous | -1.501 | Destabilizing | 1.0 | D | 0.797 | deleterious | N | 0.512810983 | None | None | N |
L/G | 0.99 | likely_pathogenic | 0.9929 | pathogenic | -3.076 | Highly Destabilizing | 1.0 | D | 0.877 | deleterious | None | None | None | None | N |
L/H | 0.9858 | likely_pathogenic | 0.9925 | pathogenic | -2.953 | Highly Destabilizing | 1.0 | D | 0.888 | deleterious | D | 0.570303753 | None | None | N |
L/I | 0.2236 | likely_benign | 0.2214 | benign | -0.705 | Destabilizing | 0.999 | D | 0.648 | neutral | N | 0.502251145 | None | None | N |
L/K | 0.9935 | likely_pathogenic | 0.9961 | pathogenic | -1.879 | Destabilizing | 1.0 | D | 0.885 | deleterious | None | None | None | None | N |
L/M | 0.3172 | likely_benign | 0.3311 | benign | -0.979 | Destabilizing | 1.0 | D | 0.779 | deleterious | None | None | None | None | N |
L/N | 0.9973 | likely_pathogenic | 0.9983 | pathogenic | -2.672 | Highly Destabilizing | 1.0 | D | 0.91 | deleterious | None | None | None | None | N |
L/P | 0.9971 | likely_pathogenic | 0.9981 | pathogenic | -1.295 | Destabilizing | 1.0 | D | 0.909 | deleterious | D | 0.570303753 | None | None | N |
L/Q | 0.986 | likely_pathogenic | 0.9909 | pathogenic | -2.238 | Highly Destabilizing | 1.0 | D | 0.911 | deleterious | None | None | None | None | N |
L/R | 0.9838 | likely_pathogenic | 0.9895 | pathogenic | -2.171 | Highly Destabilizing | 1.0 | D | 0.9 | deleterious | D | 0.570303753 | None | None | N |
L/S | 0.9943 | likely_pathogenic | 0.9961 | pathogenic | -3.098 | Highly Destabilizing | 1.0 | D | 0.882 | deleterious | None | None | None | None | N |
L/T | 0.9806 | likely_pathogenic | 0.985 | pathogenic | -2.604 | Highly Destabilizing | 1.0 | D | 0.821 | deleterious | None | None | None | None | N |
L/V | 0.289 | likely_benign | 0.284 | benign | -1.295 | Destabilizing | 0.999 | D | 0.657 | neutral | D | 0.529029134 | None | None | N |
L/W | 0.9303 | likely_pathogenic | 0.9608 | pathogenic | -1.824 | Destabilizing | 1.0 | D | 0.871 | deleterious | None | None | None | None | N |
L/Y | 0.9139 | likely_pathogenic | 0.9529 | pathogenic | -1.677 | Destabilizing | 1.0 | D | 0.856 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.