Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20164 | 60715;60716;60717 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
N2AB | 18523 | 55792;55793;55794 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
N2A | 17596 | 53011;53012;53013 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
N2B | 11099 | 33520;33521;33522 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
Novex-1 | 11224 | 33895;33896;33897 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
Novex-2 | 11291 | 34096;34097;34098 | chr2:178591235;178591234;178591233 | chr2:179455962;179455961;179455960 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/E | rs794729467 | -2.161 | 0.642 | D | 0.745 | 0.464 | None | gnomAD-2.1.1 | 7.15E-06 | None | None | None | None | N | None | 8.27E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
V/E | rs794729467 | -2.161 | 0.642 | D | 0.745 | 0.464 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 4.83E-05 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/E | rs794729467 | -2.161 | 0.642 | D | 0.745 | 0.464 | None | gnomAD-4.0.0 | 3.7191E-06 | None | None | None | None | N | None | 6.67735E-05 | 1.66783E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/I | rs72646843 | -0.04 | 0.476 | N | 0.365 | 0.161 | 0.497871611283 | gnomAD-2.1.1 | 2.5E-05 | None | None | None | None | N | None | 8.27E-05 | 2.83E-05 | None | 0 | 5.14E-05 | None | 6.55E-05 | None | 0 | 7.82E-06 | 0 |
V/I | rs72646843 | -0.04 | 0.476 | N | 0.365 | 0.161 | 0.497871611283 | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | N | None | 7.24E-05 | 1.96825E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07383E-04 | 0 |
V/I | rs72646843 | -0.04 | 0.476 | N | 0.365 | 0.161 | 0.497871611283 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
V/I | rs72646843 | -0.04 | 0.476 | N | 0.365 | 0.161 | 0.497871611283 | gnomAD-4.0.0 | 4.40091E-05 | None | None | None | None | N | None | 6.6688E-05 | 2.33442E-04 | None | 0 | 0 | None | 0 | 1.65289E-04 | 3.81506E-05 | 3.29562E-05 | 4.80292E-05 |
V/L | rs72646843 | -0.042 | 0.002 | N | 0.13 | 0.188 | 0.511331572721 | gnomAD-2.1.1 | 1.3082E-03 | None | None | None | None | N | None | 1.40152E-02 | 5.94732E-04 | None | 0 | 0 | None | 0 | None | 0 | 2.35E-05 | 4.22297E-04 |
V/L | rs72646843 | -0.042 | 0.002 | N | 0.13 | 0.188 | 0.511331572721 | gnomAD-3.1.2 | 3.75618E-03 | None | None | None | None | N | None | 1.29908E-02 | 1.50899E-03 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 2.07383E-04 | 2.39464E-03 |
V/L | rs72646843 | -0.042 | 0.002 | N | 0.13 | 0.188 | 0.511331572721 | 1000 genomes | 4.79233E-03 | None | None | None | None | N | None | 1.74E-02 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
V/L | rs72646843 | -0.042 | 0.002 | N | 0.13 | 0.188 | 0.511331572721 | gnomAD-4.0.0 | 7.14063E-04 | None | None | None | None | N | None | 1.35377E-02 | 9.0042E-04 | None | 0 | 0 | None | 0 | 9.91736E-04 | 2.20426E-05 | 3.29562E-05 | 7.68467E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.3587 | ambiguous | 0.5588 | ambiguous | -1.973 | Destabilizing | 0.002 | N | 0.138 | neutral | N | 0.461713947 | None | None | N |
V/C | 0.7778 | likely_pathogenic | 0.8406 | pathogenic | -1.609 | Destabilizing | 0.944 | D | 0.718 | prob.delet. | None | None | None | None | N |
V/D | 0.9779 | likely_pathogenic | 0.9903 | pathogenic | -2.655 | Highly Destabilizing | 0.944 | D | 0.806 | deleterious | None | None | None | None | N |
V/E | 0.9533 | likely_pathogenic | 0.9766 | pathogenic | -2.372 | Highly Destabilizing | 0.642 | D | 0.745 | deleterious | D | 0.524502322 | None | None | N |
V/F | 0.4013 | ambiguous | 0.4914 | ambiguous | -1.109 | Destabilizing | 0.704 | D | 0.746 | deleterious | None | None | None | None | N |
V/G | 0.6363 | likely_pathogenic | 0.7666 | pathogenic | -2.566 | Highly Destabilizing | 0.473 | N | 0.727 | prob.delet. | N | 0.517727519 | None | None | N |
V/H | 0.9721 | likely_pathogenic | 0.9851 | pathogenic | -2.341 | Highly Destabilizing | 0.995 | D | 0.744 | deleterious | None | None | None | None | N |
V/I | 0.0895 | likely_benign | 0.0901 | benign | -0.29 | Destabilizing | 0.476 | N | 0.365 | neutral | N | 0.469509498 | None | None | N |
V/K | 0.9529 | likely_pathogenic | 0.9748 | pathogenic | -1.794 | Destabilizing | 0.704 | D | 0.712 | prob.delet. | None | None | None | None | N |
V/L | 0.2297 | likely_benign | 0.2654 | benign | -0.29 | Destabilizing | 0.002 | N | 0.13 | neutral | N | 0.464082249 | None | None | N |
V/M | 0.2721 | likely_benign | 0.3347 | benign | -0.431 | Destabilizing | 0.085 | N | 0.331 | neutral | None | None | None | None | N |
V/N | 0.9133 | likely_pathogenic | 0.9608 | pathogenic | -2.322 | Highly Destabilizing | 0.944 | D | 0.788 | deleterious | None | None | None | None | N |
V/P | 0.9634 | likely_pathogenic | 0.981 | pathogenic | -0.826 | Destabilizing | 0.944 | D | 0.771 | deleterious | None | None | None | None | N |
V/Q | 0.9228 | likely_pathogenic | 0.9583 | pathogenic | -2.032 | Highly Destabilizing | 0.944 | D | 0.763 | deleterious | None | None | None | None | N |
V/R | 0.9228 | likely_pathogenic | 0.9576 | pathogenic | -1.817 | Destabilizing | 0.944 | D | 0.805 | deleterious | None | None | None | None | N |
V/S | 0.711 | likely_pathogenic | 0.8614 | pathogenic | -2.94 | Highly Destabilizing | 0.543 | D | 0.671 | neutral | None | None | None | None | N |
V/T | 0.548 | ambiguous | 0.7123 | pathogenic | -2.483 | Highly Destabilizing | 0.495 | N | 0.499 | neutral | None | None | None | None | N |
V/W | 0.9756 | likely_pathogenic | 0.9847 | pathogenic | -1.623 | Destabilizing | 0.995 | D | 0.736 | prob.delet. | None | None | None | None | N |
V/Y | 0.9067 | likely_pathogenic | 0.9435 | pathogenic | -1.209 | Destabilizing | 0.944 | D | 0.762 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.