Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20495 | 61708;61709;61710 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
N2AB | 18854 | 56785;56786;56787 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
N2A | 17927 | 54004;54005;54006 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
N2B | 11430 | 34513;34514;34515 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
Novex-1 | 11555 | 34888;34889;34890 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
Novex-2 | 11622 | 35089;35090;35091 | chr2:178590242;178590241;178590240 | chr2:179454969;179454968;179454967 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs370128504 | -0.508 | 0.964 | N | 0.525 | 0.389 | None | gnomAD-2.1.1 | 1.77E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 4.07E-05 | None | 0 | 1.92E-05 | 1.8622E-04 |
R/C | rs370128504 | -0.508 | 0.964 | N | 0.525 | 0.389 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 2.07727E-04 | 0 |
R/C | rs370128504 | -0.508 | 0.964 | N | 0.525 | 0.389 | None | gnomAD-4.0.0 | 2.5809E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.74081E-05 | 8.15756E-05 | 3.25924E-05 |
R/G | rs370128504 | -0.82 | 0.058 | N | 0.501 | 0.38 | 0.370240404367 | gnomAD-2.1.1 | 3.09E-05 | None | None | None | None | N | None | 0 | 2.18259E-04 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/G | rs370128504 | -0.82 | 0.058 | N | 0.501 | 0.38 | 0.370240404367 | gnomAD-4.0.0 | 5.56867E-06 | None | None | None | None | N | None | 0 | 1.64923E-04 | None | 0 | 0 | None | 0 | 0 | 9.0944E-07 | 0 | 0 |
R/H | rs775137607 | -1.116 | None | N | 0.31 | 0.114 | None | gnomAD-2.1.1 | 5.81E-05 | None | None | None | None | N | None | 1.25429E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.00284E-04 | 0 |
R/H | rs775137607 | -1.116 | None | N | 0.31 | 0.114 | None | gnomAD-3.1.2 | 1.11849E-04 | None | None | None | None | N | None | 1.44872E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47158E-04 | 2.07039E-04 | 0 |
R/H | rs775137607 | -1.116 | None | N | 0.31 | 0.114 | None | gnomAD-4.0.0 | 5.16057E-05 | None | None | None | None | N | None | 1.21336E-04 | 0 | None | 0 | 0 | None | 0 | 1.68407E-04 | 5.82365E-05 | 1.16293E-05 | 4.88743E-05 |
R/L | rs775137607 | 0.295 | 0.13 | N | 0.523 | 0.166 | 0.273938319068 | gnomAD-2.1.1 | 8.82E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.92E-05 | 0 |
R/L | rs775137607 | 0.295 | 0.13 | N | 0.523 | 0.166 | 0.273938319068 | gnomAD-4.0.0 | 2.78362E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.63737E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4157 | ambiguous | 0.4721 | ambiguous | -0.439 | Destabilizing | 0.031 | N | 0.521 | neutral | None | None | None | None | N |
R/C | 0.1694 | likely_benign | 0.1893 | benign | -0.435 | Destabilizing | 0.964 | D | 0.525 | neutral | N | 0.477519352 | None | None | N |
R/D | 0.661 | likely_pathogenic | 0.7114 | pathogenic | -0.013 | Destabilizing | 0.038 | N | 0.517 | neutral | None | None | None | None | N |
R/E | 0.4281 | ambiguous | 0.4678 | ambiguous | 0.082 | Stabilizing | 0.016 | N | 0.559 | neutral | None | None | None | None | N |
R/F | 0.5567 | ambiguous | 0.6047 | pathogenic | -0.439 | Destabilizing | 0.214 | N | 0.532 | neutral | None | None | None | None | N |
R/G | 0.3363 | likely_benign | 0.4156 | ambiguous | -0.706 | Destabilizing | 0.058 | N | 0.501 | neutral | N | 0.495370118 | None | None | N |
R/H | 0.0935 | likely_benign | 0.0958 | benign | -1.063 | Destabilizing | None | N | 0.31 | neutral | N | 0.452311526 | None | None | N |
R/I | 0.3211 | likely_benign | 0.3682 | ambiguous | 0.255 | Stabilizing | 0.356 | N | 0.549 | neutral | None | None | None | None | N |
R/K | 0.1119 | likely_benign | 0.1252 | benign | -0.479 | Destabilizing | None | N | 0.307 | neutral | None | None | None | None | N |
R/L | 0.2965 | likely_benign | 0.3242 | benign | 0.255 | Stabilizing | 0.13 | N | 0.523 | neutral | N | 0.483528361 | None | None | N |
R/M | 0.3746 | ambiguous | 0.4065 | ambiguous | -0.088 | Destabilizing | 0.628 | D | 0.549 | neutral | None | None | None | None | N |
R/N | 0.4409 | ambiguous | 0.508 | ambiguous | -0.016 | Destabilizing | None | N | 0.347 | neutral | None | None | None | None | N |
R/P | 0.8213 | likely_pathogenic | 0.8531 | pathogenic | 0.045 | Stabilizing | 0.515 | D | 0.546 | neutral | N | 0.483849228 | None | None | N |
R/Q | 0.1132 | likely_benign | 0.1204 | benign | -0.19 | Destabilizing | 0.072 | N | 0.523 | neutral | None | None | None | None | N |
R/S | 0.4246 | ambiguous | 0.4745 | ambiguous | -0.64 | Destabilizing | 0.058 | N | 0.526 | neutral | N | 0.475428953 | None | None | N |
R/T | 0.2338 | likely_benign | 0.2674 | benign | -0.381 | Destabilizing | 0.072 | N | 0.532 | neutral | None | None | None | None | N |
R/V | 0.3456 | ambiguous | 0.3999 | ambiguous | 0.045 | Stabilizing | 0.136 | N | 0.535 | neutral | None | None | None | None | N |
R/W | 0.2427 | likely_benign | 0.2539 | benign | -0.241 | Destabilizing | 0.864 | D | 0.551 | neutral | None | None | None | None | N |
R/Y | 0.3979 | ambiguous | 0.4351 | ambiguous | 0.097 | Stabilizing | 0.12 | N | 0.543 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.