Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20557 | 61894;61895;61896 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
N2AB | 18916 | 56971;56972;56973 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
N2A | 17989 | 54190;54191;54192 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
N2B | 11492 | 34699;34700;34701 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
Novex-1 | 11617 | 35074;35075;35076 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
Novex-2 | 11684 | 35275;35276;35277 | chr2:178590056;178590055;178590054 | chr2:179454783;179454782;179454781 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/D | rs1440800435 | None | 0.454 | N | 0.491 | 0.316 | 0.317084106153 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
H/D | rs1440800435 | None | 0.454 | N | 0.491 | 0.316 | 0.317084106153 | gnomAD-4.0.0 | 6.57644E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47106E-05 | 0 | 0 |
H/R | rs1472565206 | 0.184 | 0.669 | N | 0.341 | 0.263 | 0.263612267334 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
H/R | rs1472565206 | 0.184 | 0.669 | N | 0.341 | 0.263 | 0.263612267334 | gnomAD-4.0.0 | 1.36894E-06 | None | None | None | None | I | None | 2.99061E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99688E-07 | 0 | 0 |
H/Y | rs1440800435 | None | 0.961 | N | 0.419 | 0.289 | 0.342168650903 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
H/Y | rs1440800435 | None | 0.961 | N | 0.419 | 0.289 | 0.342168650903 | gnomAD-4.0.0 | 6.57644E-06 | None | None | None | None | I | None | 2.41348E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.2098 | likely_benign | 0.241 | benign | 0.245 | Stabilizing | 0.688 | D | 0.577 | neutral | None | None | None | None | I |
H/C | 0.1556 | likely_benign | 0.1869 | benign | 0.547 | Stabilizing | 0.998 | D | 0.567 | neutral | None | None | None | None | I |
H/D | 0.2015 | likely_benign | 0.2757 | benign | 0.085 | Stabilizing | 0.454 | N | 0.491 | neutral | N | 0.415346939 | None | None | I |
H/E | 0.1972 | likely_benign | 0.2484 | benign | 0.081 | Stabilizing | 0.01 | N | 0.158 | neutral | None | None | None | None | I |
H/F | 0.1962 | likely_benign | 0.2059 | benign | 0.607 | Stabilizing | 0.991 | D | 0.488 | neutral | None | None | None | None | I |
H/G | 0.3219 | likely_benign | 0.3873 | ambiguous | 0.016 | Stabilizing | 0.842 | D | 0.552 | neutral | None | None | None | None | I |
H/I | 0.1763 | likely_benign | 0.1966 | benign | 0.802 | Stabilizing | 0.974 | D | 0.574 | neutral | None | None | None | None | I |
H/K | 0.2147 | likely_benign | 0.2755 | benign | 0.211 | Stabilizing | 0.525 | D | 0.474 | neutral | None | None | None | None | I |
H/L | 0.1006 | likely_benign | 0.1148 | benign | 0.802 | Stabilizing | 0.801 | D | 0.567 | neutral | N | 0.425467932 | None | None | I |
H/M | 0.287 | likely_benign | 0.3014 | benign | 0.653 | Stabilizing | 0.991 | D | 0.547 | neutral | None | None | None | None | I |
H/N | 0.0806 | likely_benign | 0.0956 | benign | 0.283 | Stabilizing | 0.801 | D | 0.353 | neutral | N | 0.424947857 | None | None | I |
H/P | 0.4281 | ambiguous | 0.566 | pathogenic | 0.641 | Stabilizing | 0.891 | D | 0.539 | neutral | N | 0.444227051 | None | None | I |
H/Q | 0.1209 | likely_benign | 0.1362 | benign | 0.304 | Stabilizing | 0.051 | N | 0.229 | neutral | N | 0.369246503 | None | None | I |
H/R | 0.1298 | likely_benign | 0.1629 | benign | -0.153 | Destabilizing | 0.669 | D | 0.341 | neutral | N | 0.376385906 | None | None | I |
H/S | 0.1537 | likely_benign | 0.1701 | benign | 0.284 | Stabilizing | 0.688 | D | 0.469 | neutral | None | None | None | None | I |
H/T | 0.1506 | likely_benign | 0.1655 | benign | 0.371 | Stabilizing | 0.842 | D | 0.546 | neutral | None | None | None | None | I |
H/V | 0.1445 | likely_benign | 0.1607 | benign | 0.641 | Stabilizing | 0.915 | D | 0.585 | neutral | None | None | None | None | I |
H/W | 0.3682 | ambiguous | 0.4124 | ambiguous | 0.54 | Stabilizing | 0.998 | D | 0.557 | neutral | None | None | None | None | I |
H/Y | 0.0879 | likely_benign | 0.0999 | benign | 0.891 | Stabilizing | 0.961 | D | 0.419 | neutral | N | 0.433626056 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.